Table 2 Summary of chromosomal SNP and INDEL distribution for KRICE_CORE
Chromosome | SNP | INDEL | ||||||
|---|---|---|---|---|---|---|---|---|
| Â | Total | High quality | Total | High quality | ||||
| Â | Count | Densitya | Count | Density | Count | Density | Count | Density |
1 | 1,492,529 | 34.5 | 245,749 | 5.7 | 157,701 | 3.6 | 34,662 | 0.8 |
2 | 1,194,215 | 33.2 | 219,868 | 6.1 | 123,316 | 3.4 | 28,870 | 0.8 |
3 | 1,117,000 | 30.7 | 227,031 | 6.2 | 116,347 | 3.2 | 30,925 | 0.8 |
4 | 1,482,884 | 41.8 | 151,464 | 4.3 | 118,490 | 3.3 | 19,101 | 0.5 |
5 | 1,136,915 | 37.9 | 190,680 | 6.4 | 98,439 | 3.3 | 23,019 | 0.8 |
6 | 1,279,651 | 41.0 | 175,920 | 5.6 | 117,347 | 3.8 | 22,733 | 0.7 |
7 | 1,268,980 | 42.7 | 152,153 | 5.1 | 112,520 | 3.8 | 20,766 | 0.7 |
8 | 1,323,731 | 46.5 | 148,873 | 5.2 | 113,720 | 4.0 | 18,831 | 0.7 |
9 | 969,987 | 42.2 | 128,492 | 5.6 | 85,643 | 3.7 | 16,566 | 0.7 |
10 | 1,081,145 | 46.6 | 141,153 | 6.1 | 91,306 | 3.9 | 17,727 | 0.8 |
11 | 1,425,491 | 49.1 | 148,897 | 5.1 | 128,449 | 4.4 | 17,902 | 0.6 |
12 | 1,352,277 | 49.1 | 116,249 | 4.2 | 115,237 | 4.2 | 15,040 | 0.5 |
Total | 15,124,805 | 40.5 | 2,046,529 | 5.5 | 1,378,515 | 3.7 | 266,142 | 0.7 |