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Table 8 Annotation of genes with Class A mutation or CNAs in MDA sub-lines

From: The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells

MDA

MDA

MDA

MDA

MDA

SUB-0.27nM

SUB-5nM

SUB-15nM

SUB-100nM

RES-150nM

 

Chromatin modification

Nucleotide-binding

 

Protein dimerization activity

MSL3, KDM6A, PHF16, KDM4C, RBBP7

ABCB1, JAK2, RIOK1, CDK16, CDK14, PRKX

NOTCH2, VWF, SLC11A1, DPP4

Purine nucleoside binding, adenyl nucleotide binding, atp-binding

T cell activation

EPHA5, RPS6KA3, ABCA9, DDX3X, UBA1, MAPK13, CASK, CTPS2, VARS, PRPS2, CLCN4

CARD11, SLC11A1, DPP4

Kinase

Transport

EPHA5, RPS6KA3, MAPK13, SH3KBP1, CASK, PRPS2

SLC11A1, CACNA1I, MFI2, CACNA2D3, AQP7, AQP3

Regulation of transcription from RNA polymerase II promoter

CASK, MED14, RBBP7, TBL1X

Transport

CLCN4, CCDC64, AP1S2, CASK, ABCA9, ATP5J, APOO