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Table 6 Proportions of additive genetic variances explained by significant SNPs or SNPs with large absolute effects

From: Comparative analysis of the GBLUP, emBayesB, and GWAS algorithms to predict genetic values in large yellow croaker (Larimichthys crocea)

  No. of SNPsa Variance (Proportion)b VA c
GWAS GBLUP emBayesB
Body weight 83 0.187 (30.1 %) 0.387 (62.3 %) 0.489 (78.7 %) 0.621
Body length 43 0.175 (29.7 %) 0.356 (60.3 %) 0.436 (73.9 %) 0.590
n-3HUFA 48 0.281 (63.9 %) 0.382 (86.8 %) 0.454 (103.2 %) 0.440
  1. aThe number of significant SNPs (or SNPs with the largest absolute effects) was selected to analyze additive genetic variance components
  2. bAdditive genetic variance explained by significant SNPs and the proportion in total additive genetic variance
  3. cTotal additive genetic variance estimated by using all SNPs