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Table 6 Proportions of additive genetic variances explained by significant SNPs or SNPs with large absolute effects

From: Comparative analysis of the GBLUP, emBayesB, and GWAS algorithms to predict genetic values in large yellow croaker (Larimichthys crocea)

 

No. of SNPsa

Variance (Proportion)b

VA c

GWAS

GBLUP

emBayesB

Body weight

83

0.187 (30.1 %)

0.387 (62.3 %)

0.489 (78.7 %)

0.621

Body length

43

0.175 (29.7 %)

0.356 (60.3 %)

0.436 (73.9 %)

0.590

n-3HUFA

48

0.281 (63.9 %)

0.382 (86.8 %)

0.454 (103.2 %)

0.440

  1. aThe number of significant SNPs (or SNPs with the largest absolute effects) was selected to analyze additive genetic variance components
  2. bAdditive genetic variance explained by significant SNPs and the proportion in total additive genetic variance
  3. cTotal additive genetic variance estimated by using all SNPs
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BMC Genomics

ISSN: 1471-2164

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