Fig. 2

Presence and absence of homologues to C. elegans genes that control the dauer switch. Each box gives the best case for the homologue. A published gene model that was matched to a C. elegans dauer gene using fuzzy reciprocal BLAST is shown in green. Homologues detected using one of the six other search strategies and that led to minor refinements in a published gene model are shown in purple. Homologues that required major improvements to the published gene model or for which no gene model was present in the published annotation, are shown in orange. An X denotes a homologue that was detected by mapping DNA sequence reads to the C. elegans protein sequence. The species codes are: ASCSU – Ascaris suum; BRUMA – Brugia malayi; BURXY - Bursaphelenchus xylophilus; CAE_5 – Caenorhabditis sp. 5; CAEAN – Caenorhabditis angaria; CAEBN – C. brenneri; CAEBR – C. briggsae; CAEEL – C. elegans; CAEJA – C. japonica; CAERE – C. remanei; HAECO – Haemonchus contortus; HETBA – Heterorhabditis bacteriophora; LOALO – Loa loa; MELHA – Meloidogyne hapla; NECAM – Necator americanus; PANRE – Panagrellus redivivus; PRIEX – Pristionchus exspectatus; PRIPA – Pristionchus pacificus; ROMCU – Romanomermis culicivorax; STECA – Steinernema carpocapsae; STRRA – Strongyloides ratti; TOXCA – Toxocara canis; TRISP – Trichinella spiralis; TRISU – Trichuris suis