Fig. 7
From: MBDDiff: an R package designed specifically for processing MBDcap-seq datasets
Functionalities for MBDDiff for processing TBNC datasets. a Density plot of GC content grouped by different levels of methylation for all 100Â bp windows across the whole genome of one example TNBC sample; (b) Distribution of background noise and promoter counts; (c) 3D PCA plot of sample relation, T indicates tumor samples, N indicates normal samples; (d) Heatmap of selected promoters for 6 TNBC samples