Exploiting genotyping by sequencing to characterize the genomic structure of the American cranberry through high-density linkage mapping

Table 2 Genome-wide features of the cranberry integrated (I) and parental bin maps (P₁ and P₂)

LG	No.Dist.Mark			%Dist.Mark			#Rec.Event		LD.decay		No.genes			No.scaff			Mb
LG	I	P₁	P₂	I	P₁	P₂	P₁	P₂	P₁	P₂	I	P₁	P₂	I	P₁	P₂	I	P₁	P₂
1	45	5	30	8.3	2.5	13.6	1.4	1.2	31.7	32.1	136	56	76	257	113	131	1.4	0.5	0.7
2	20	9	7	4.8	4.7	5.2	1.1	0.9	31.9	31.0	132	68	58	205	111	85	1.1	0.6	0.4
3	7	3	4	2.0	2.1	2.6	1.2	0.9	33.1	32.4	96	40	45	183	81	85	0.9	0.4	0.4
4	19	3	9	5.4	2.2	5.2	1.1	0.9	35.8	32.5	106	36	62	195	89	107	1.0	0.4	0.6
5	13	2	10	4.3	6.9	4.1	0.7	1.0	23.0	31.3	97	11	65	142	17	128	0.8	0.1	0.6
6	83	10	60	19.7	7.0	38.2	1.3	0.9	35.0	31.2	107	40	49	200	84	84	1.1	0.5	0.4
7	65	11	36	19.4	8.1	32.7	1.2	0.9	32.0	31.0	88	64	29	162	85	67	0.8	0.5	0.3
8	22	4	3	7.3	3.8	2.7	1.0	0.8	28.9	31.6	75	32	29	152	60	67	0.8	0.3	0.3
9	60	8	46	12.7	4.4	27.5	1.1	1.0	32.1	31.6	108	57	45	226	102	89	1.1	0.5	0.4
10	36	7	25	9.7	5.7	16.4	0.8	0.8	29.8	31.0	98	43	56	186	70	84	0.9	0.4	0.5
11	86	8	57	16.3	4.9	24.9	0.9	1.0	32.5	32.7	131	51	70	258	98	129	1.3	0.5	0.6
12	67	10	29	14.8	5.5	17.0	1.2	1.0	32.0	33.2	111	59	66	215	109	98	1.1	0.5	0.6
Total^a	523	80	316	10.4	4.8	15.9	1.1	0.9	31.5	31.8	1285	557	650	2381	1019	1154	12.3	5.1	5.9

Summary of number of distorted markers, percent of distorted markers, number of recombination events, linkage disequilibrium (considered at r ² = 0.2), and number of genes, scaffolds and Mb anchored
^aSummed across LGs = No.Dist.Mark, No.genes, No.scaff, Mb; Averaged across LGs = %Dist.Mark, #Rec.Event, and LD.decay

ISSN: 1471-2164