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Table 1 Summary of the alignment statistics for cDNA libraries in A. japonicus

From: RNA sequencing analysis to capture the transcriptome landscape during skin ulceration syndrome progression in sea cucumber Apostichopus japonicus

Sample ID

Libraries name

Total Reads

Total Clean Reads (Percentage)

Total Mapped Reads (Percentage)

1

H-BW (D1)

12,378,414

12,098,662 (97.74 %)

9,410,905 (77.78 %)

2

H-Int (D2)

12,602,105

12,430,716 (98.64 %)

9,576,807 (77.04 %)

3

H-RT (D3)

12,674,851

12,498,671 (98.61 %)

9,454,890 (75.65 %)

4

H-C (D4)

13,579,708

12,972,695 (95.53 %)

9,914,340 (76.42 %)

5

I-SUS-BW (D5)

12,791,397

12,451,146 (97.34 %)

9,473,854 (76.09 %)

6

I-N-BW (D6)

11,709,219

11,400,096 (97.36 %)

8,611,908 (75.54 %)

7

II-SUS-BW (D7)

12,426,665

12,262,633 (98.68 %)

9,408,950 (76.73 %)

8

II-N-BW (D8)

11,529,198

11,225,980 (97.37 %)

8,409,997 (74.92 %)

9

II-SUS-Int (D9)

13,183,442

13,008,102 (98.67 %)

10,255,121 (78.84 %)

10

II-SUS-RT (D10)

13,080,922

12,887,324 (98.52 %)

10,057,462 (78.04 %)

11

II-SUS-C (D11)

13,220,635

13,044,801 (98.67 %)

10,064,650 (77.15 %)

12

III-SUS-BW (D12)

12,239,111

12,073,883 (98.65 %)

9,327,113 (77.25 %)

13

III-N-BW (D13)

13,050,949

12,819,947 (98.23 %)

9,831,997 (76.69 %)

Total reads for the first RNA-seq

164,466,616

161,174,656 (98.00 %)

123,797,994 (76.81 %)

14

H-BW (T1)

51,200,576

50,022,670 (97.7 %)

38,946,697 (77.86 %)

15

H-BW (T2)

44,371,450

43,357,830 (97.72 %)

32,165,535 (74.19 %)

16

I-SUS-BW (T3)

51,818,216

50,866,582 (98.16 %)

39,225,086 (77.11 %)

17

I-SUS-BW (T4)

49,027,132

47,952,352 (97.81 %)

37,436,180 (78.07 %)

18

II-SUS-BW (T5)

40,931,866

40,071,484 (97.9 %)

30,984,132 (77.32 %)

19

II-SUS-BW (T6)

55,174,172

53,899,574 (97.69 %)

42,222,134 (78.33 %)

20

III-SUS-BW (T7)

43,123,468

42,213,860 (97.89 %)

32,138,856 (76.13 %)

21

III-SUS-BW (T8)

53,099,410

52,385,034 (98.65 %)

40,650,674 (77.59 %)

Total reads for all RNA-seq

553,212,906

541,944,042 (97.96 %)

417,567,288 (77.05 %)

  1. Note: H Healty sea cucumber, BW Body wall, Int Intestine, RT Respiratory tree, C Coelomocyte, SUS Skin ulceration syndrome, I SUS stage I, II SUS stage II, III SUS stage III, N Normal tissue