Table 2 Genomic variation relative the Cryptosporidium parvum IowaII reference genome or the Uppsala1499 metagenome
From: Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes
SNPs | Single cellsavs. IowaII | Single cellsa vs. Uppsala1499 | Uppsala1499 vs. IowaII |
|---|---|---|---|
Total | 3350 | 210 | 3874 |
C > T | 545 | 91 | 622 |
G > A | 583 | 105 | 669 |
A > G | 584 | 1 | 679 |
T > C | 559 | 5 | 667 |
T > A | 174 | 1 | 204 |
A > T | 172 | 2 | 197 |
C > A | 151 | 3 | 153 |
G > T | 198 | 0 | 227 |
G > C | 47 | 1 | 58 |
C > G | 57 | 1 | 67 |
T > G | 142 | 0 | 170 |
A > C | 138 | 0 | 161 |