Skip to main content

Table 4 Pairwise SNPs distributions in Saccharum species

From: Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

  Aligned sequence(bp) SNP number SNP % 100 nt 250 nt 500 nt 1000 nt
SD 0 SNPs (%) SD 0 SNPs (%) SD 0 SNPs(%) SD 0 SNPs(%)
So 196401 3501 1.78 1.73 31.35 3.57 11.26 6.52 2.77 11.77 0.40
Ss 67783 881 1.30 1.34 50.22 2.94 27.52 5.51 22.30 9.78 17.39
Ss/So 311687 6389 2.05 1.76 18.66 3.54 3.31 6.27 0.49 11.32 0.00
  1. Notes
  2. The SNPs discovery was based on pairwise gapless sequence comparisons
  3. 0 SNPs (%): The percentage of fragments for specific sizes (100 nt, 250 nt, 500 nt and 1000 nt) that contained no SNP
  4. SD: The standard variation of SNP numbers among the specific sizes of fragments
  5. So: S. officinarum, Ss: S. spontaneum