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Table 4 Pairwise SNPs distributions in Saccharum species

From: Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

 

Aligned sequence(bp)

SNP number

SNP %

100 nt

250 nt

500 nt

1000 nt

SD

0 SNPs (%)

SD

0 SNPs (%)

SD

0 SNPs(%)

SD

0 SNPs(%)

So

196401

3501

1.78

1.73

31.35

3.57

11.26

6.52

2.77

11.77

0.40

Ss

67783

881

1.30

1.34

50.22

2.94

27.52

5.51

22.30

9.78

17.39

Ss/So

311687

6389

2.05

1.76

18.66

3.54

3.31

6.27

0.49

11.32

0.00

  1. Notes
  2. The SNPs discovery was based on pairwise gapless sequence comparisons
  3. 0 SNPs (%): The percentage of fragments for specific sizes (100 nt, 250 nt, 500 nt and 1000 nt) that contained no SNP
  4. SD: The standard variation of SNP numbers among the specific sizes of fragments
  5. So: S. officinarum, Ss: S. spontaneum
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BMC Genomics

ISSN: 1471-2164

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