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Table 3 Pathway activities levels with ratio

From: Inferring metabolic pathway activity levels from RNA-Seq data

Pathway

Expression

Expression

Ratio between

 

from symbiotic

from aposymbiotic

pathway

 

Bugula

Bugula

expressions

ko00300

2.75

0.38

7.27

ko00290

4.26

1.71

2.49

ko04712

1.77

0.77

2.30

ko00903

1.88

0.84

2.25

ko01220

2.24

1.10

2.04

ko00981

2.00

1.00

2.00

ko04744

3.55

1.82

1.95

ko00626

1.48

0.76

1.93

ko00624

1.17

0.67

1.76

ko00072

2.17

1.25

1.74

ko00730

2.50

1.50

1.67

ko04730

3.80

2.40

1.58

ko00363

2.92

1.88

1.56

ko05150

2.13

1.38

1.55

ko04112

3.00

2.00

1.50

ko05219

1.67

2.50

0.66

ko00625

1.00

1.98

0.50

ko00984

1.00

2.00

0.50

ko00592

1.25

3.02

0.42

ko00965

0.66

1.66

0.40

ko00940

1.42

3.71

0.38

ko00460

0.60

2.02

0.30

ko00944

0.17

1.17

0.14

  1. Expression represents the expression level of the pathway activity in symbiotic (Lane 1) and aposymbiotic (Lane 2) B. neritina data. This table presents pathways with a ratio of 1.5 or higher in their activity level or pathways with a ratio of 0.66 or lower from the opposite direction. Using the criteria described in section 2, they are found to significantly differ in activities level