Table 2 De-novo assembly statistics. Summary of transcriptome data de novo assembled from libraries of cvs Leccino and Ogliarola salentina. The combined transcriptome was obtained by merging non-redundant transcripts of the two cultivars
Cultivar | Leccino | Ogliarola salentina | Combined |
|---|---|---|---|
Total reads | 98,465,263 | 135,873,602 | – |
Number of RNAseq libraries | 5 | 5 | 10 |
Minimum length of transcript (bp) | 100 | 100 | 100 |
Maximum length of transcript (bp) | 8,979 | 7,860 | 8,979 |
Average length of transcripts (bp) | 308 | 313 | 270 |
Total length of sequence (bp) | 86,372,337 | 111,135,716 | 100,071,628 |
Total number of sequences | 279,855 | 354,422 | 370,495 |
N50 stats | > = 781 bp | > = 850 bp | > = 757 bp |
N75 stats | > = 406 bp | > = 424 bp | > = 328 bp |
GC percentage % | 41.73Â % | 40.75Â % | 40.61Â % |