Skip to main content

Table 1 Expression (in rpm) of pairs of highly expressed miRNAs/5’isomiRs in a panel of breast cancer cell lines

From: The highly expressed 5’isomiR of hsa-miR-140-3p contributes to the tumor-suppressive effects of miR-140 by reducing breast cancer proliferation and migration

Notation of isoform   Seed sequence MCF7 MDA-MB-231 T47D BT20 BT474 MDA-MB-468 ZR-75 MCF10A
miR-10a-5p 0|x canonical ACCCTGT 81.9 4923.9 9254.5 7698.9 96.5 181.4 854.1 582.7
miR-10a-5p +1|x isomiR CCCTGTA 56.9 2158.4 3911.3 3660.0 64.2 65.0 477.0 273.0
miR-1307-3p 0|x canonical CTCGGCG 1159.2 737.2 2299.7 575.6 1894.2 554.8 2560.7 290.0
miR-1307-3p +1|x isomiR TCGGCGT 394.2 253.2 943.8 222.5 643.7 348.3 784.3 72.7
miR-140-3p 0|x canonical ACCACAG 180.9 486.8 117.4 289.0 149.1 63.0 181.2 199.2
miR-140-3p +1|x isomiR CCACAGG 407.7 851.6 284.8 568.7 217.6 95.2 306.2 332.8
miR-183-5p 0|x canonical ATGGCAC 1187.2 91.7 1065.9 1132.5 2017.2 1028.1 849.9 518.7
miR-183-5p +1|x isomiR TGGCACT 1102.0 44.0 831.3 822.5 1860.5 767.9 725.6 312.4
miR-203-3p 0|x canonical TGAAATG 2327.2 3.1 2514.6 544.1 5319.0 427.8 2870.3 71.3
miR-203-3p +1|x isomiR GAAATGT 2115.5 1.5 1137.8 329.8 2116.1 175.1 1104.8 23.1
miR-30a-3p 0|x canonical TTTCAGT 13.9 991.7 162.5 191.8 30.8 1033.2 108.8 239.7
miR-30a-3p +1|x isomiR TTCAGTC 3.7 305.1 53.5 65.8 6.6 311.7 35.8 44.1