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Table 4 Candidate genes most highly associated with early maturity within 500 kb of either side of the SNP locus rs13562854

From: Identification of favorable SNP alleles and candidate genes for traits related to early maturity via GWAS in upland cotton

#GeneID Start Stop Direction Distance to SNP (kb) Annotation
CotAD_01929 13482736 13483020 Forward 79.83  
CotAD_01940 13836983 13837348 Reverse 274.13 Tetratricopeptide repeat-like superfamily protein, putative
CotAD_01935 13685536 13686374 Reverse 122.68 Zinc finger protein, putative isoform 1
CotAD_01920 13173869 13177058 Forward 385.80 Enolase 1, chloroplastic-like protein
CotAD_01932 13669620 13671044 Reverse 106.77 Zinc finger protein, putative isoform 1
CotAD_01921 13215464 13215928 Reverse 346.93 Proline and serine-rich 1
CotAD_01931 13641931 13643458 Reverse 79.08 Ribonuclease P subunit p30
CotAD_01934 13680075 13680812 Forward 117.22 Hypothetical protein F383_23360
CotAD_01930 13549901 13550143 Forward 12.71  
CotAD_01939 13835211 13836617 Forward 272.36 UDP-glycosyltransferase 89B1-like
CotAD_01941 13837426 13838590 Reverse 274.57 Tetratricopeptide repeat-like superfamily protein, putative
CotAD_01943 13894122 13897285 Reverse 331.27 Hypothetical protein F383_21541
CotAD_01949 14027015 14029396 Reverse 464.16 ADP, ATP carrier protein ER-ANT1-like
CotAD_01928 13425578 13427698 Reverse 135.16 DNA-directed RNA polymerases I and III subunit RPAC1
CotAD_01944 13922306 13923205 Forward 359.45  
CotAD_01942 13839501 13840400 Reverse 276.65 UDP-glucosyl transferase 89B1, putative
CotAD_01919 13169627 13172234 Forward 390.62 DnaJ, mitochondrial
CotAD_01937 13763420 13764002 Forward 200.57  
CotAD_01926 13313301 13314846 Forward 248.01 Zinc finger CONSTANS-LIKE 2-like protein
CotAD_01915 13095428 13096529 Forward 466.33 UDP-N-acetylmuramoyl-alanine-D-glutamate ligase
CotAD_01922 13233921 13234454 Forward 328.40  
CotAD_01914 13066571 13067059 Forward 495.80 Agamous-like MADS-box protein A
CotAD_01938 13771588 13773328 Forward 208.73 Crooked neck-like protein 1
CotAD_01924 13252910 13256745 Forward 306.11 Serine/threonine protein kinase 16
CotAD_01946 13990075 13991007 Forward 427.22 OBF-binding protein 4, putative
CotAD_01948 14020947 14021135 Reverse 458.09 Hypothetical protein CISIN_1g035470mg
CotAD_01947 14015684 14017498 Reverse 452.83 MADS-box protein
CotAD_01918 13135919 13143770 Forward 419.08 Putative acyl-activating enzyme 17, peroxisomal-like protein
CotAD_01945 13956974 13957540 Reverse 394.12 ARM repeat superfamily protein
CotAD_01923 13236335 13238168 Forward 324.69 Hypothetical protein F383_15236
CotAD_01916 13103756 13106200 Forward 456.65  
CotAD_01936 13717384 13722424 Reverse 154.53 WD repeat and HMG-box DNA-binding 1