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Table 1 Characteristics and sequence accession numbers for dairy-associated B. cereus group isolates sequenced in this study

From: Production of hemolysin BL by Bacillus cereus group isolates of dairy origin is associated with whole-genome phylogenetic clade

Isolate Source BioSample ID SRA Run GenBank accession number PubMLST ID rpoB allelic type (AT) MLST STa Novel MLST AT or STb
FSL H7-0926 Pasteurized 2 % milk SAMN03800014 SRR2541537 LOBD00000000 1774 90 667  
FSL H8-0482 Soil from areas adjacent to barns SAMN03800015 SRR2541601 LOAZ00000000 1764 129 223  
FSL H8-0488 Water from hose in milking area SAMN03800016 SRR2541602 LOBA00000000 1765 129 111  
FSL K6-0040 Raw milk SAMN03800017 SRR2541603 LOBE00000000 1775 362 1101 ilv 245, ST-1101
FSL K6-0043 Raw milk SAMN03800018 SRR2541604 LOMW00000000 1763 363 1087 pta 235, ST-1087
FSL K6-0067 Raw milk SAMN03800019 SRR2541605 LOMN00000000 1762 365 1086 gmk 138, pur 218, ST-1086
FSL K6-0069 Raw milk SAMN03800020 SRR2541606 LOBB00000000 1756 194 1080 glp 224, gmk 135, ilv 237, pta 233, ST-1080
FSL K6-0073 Raw milk SAMN03800021 SRR2541607 LOMO00000000 1773 366 33  
FSL K6-0267 Raw milk SAMN03800022 SRR2541613 LOMP00000000 1755 90 1090 ST-1090
FSL M8-0117 Raw milk SAMN03800023 SRR2541639 LONG00000000 1761 308 1085 gmk 137, pyc 186, ST-1085
FSL W8-0003 Ricotta/mozzarella whey SAMN03800024 SRR2541640 LOMQ00000000 1760 125 1084 ilv 239, ST-1084
FSL W8-0050 Condensed product from evaporator SAMN03800025 SRR2541641 LOMR00000000 1772 380 32  
FSL W8-0169 Raw milk SAMN03800026 SRR2541651 LOBC00000000 1757 61 1081 gmk 136, pta 234, ST-1081
FSL W8-0268 Evaporator - liquid SAMN03800027 SRR2541662 LOMS00000000 1759 92 1083 tpi 185, ST-1083
FSL W8-0275 Liquid milk whey permeate SAMN03800028 SRR2541668 LOMT00000000 1771 463 1050  
FSL W8-0483 Liquid raw milk from silo SAMN03800029 SRR2541674 LOMU00000000 1758 120 1082 ilv 238, ST-1082
FSL W8-0520 Processed liquid milk SAMN03800030 SRR2541680 LONH00000000 1770 481 1032  
FSL W8-0523 Liquid from blended whey silo SAMN03800031 SRR2541686 LOMV00000000 1769 481 1032  
FSL W8-0640 Processed skim milk SAMN03800032 SRR2541688 LOQA00000000 1754 154 1089 ST-1089
FSL W8-0824 Finished dairy product SAMN03800033 SRR2541693 LOQB00000000 1767 92 24  
FSL W8-0932 Processed skim milk SAMN03800034 SRR2541715 LOQC00000000 1766 120 365  
FSL W8-0767 Milk powder SAMN03800035 SRR2541718 LOQD00000000 1768 154 787  
  1. aST sequence type, MLST STs were assigned to be consistent with the B. cereus PubMLST database [35]
  2. bAT allelic type; this column indicates new allelic types for MLST genes (e.g., ilv 245; gene names can be found on PubMLST database website [35]) and newly assigned STs (e.g., ST-1087)
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BMC Genomics

ISSN: 1471-2164

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