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Table 3 Top 10 down- and up-regulated genes in treatment group compared to control group

From: High concentrations of atmospheric ammonia induce alterations of gene expression in the breast muscle of broilers (Gallus gallus) based on RNA-Seq

Gene ID

Gene symbol

Fold change

Down-regulated genes

Down

 NM_001199909.1

PDK4

30.4

 XM_004940680.1

FHL1

23.5

 NM_001277411.1

CA3

18.1

 NM_001167752.2

MB

17.3

 XM_004937471.1

PFKFB3

13.0

 XM_004937841.1

MYBPC1 a

12.4

 XM_416332.4

MYBPC1 b

11.8

 NM_001005431.1

FKBP5

11.4

 NM_001030956.1

FBXO32

9.8

 XM_416965.4

METTL21C

8.5

Up-regulated genes

Up

 XM_004950318.1

LOC101748351

11.4

 XM_419014.3

SBK2

7.0

 XM_004938015.1

CYB5R3

5.8

 XM_417174.4

DCUN1D5

4.8

 NM_204672.1

SNCG

4.8

 NM_001007477.3

LOC396531

4.0

 XM_004944616.1

LOC770936

3.6

 XM_419574.4

C1ORF96

3.4

 NM_001001766.1

LIMS1

3.4

 XM_004946388.1

DNAJC30

3.4

  1. PDK4, pyruvate dehydrogenase kinase, isozyme 4, FHL1 four and a half LIM domains 1 CA3, carbonic anhydrase III, muscle specific, MB myoglobin, PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, MYBPC1 a myosin binding protein C, slow type, transcript variant X1, MYBPC1 b myosin binding protein C, slow type, transcript variant X2, FKBP5 FK506 binding protein 5, FBXO32 F-box protein 32, METTL21C methyltransferase like 21C, LOC101748351 spindle and kinetochore-associated protein 1-like, SBK2 SH3-binding domain kinase family, member 2, CYB5R3 cytochrome b5 reductase 3, DCUN1D5 DCN1, defective in cullin neddylation 1, domain containing 5, SNCG synuclein, gamma (breast cancer-specific protein 1), LOC396531 parvalbumin, LOC770936 serine/threonine-protein kinase SRPK3-like, C1ORF96 chromosome 3 open reading frame, human C1orf96, LIMS1 LIM and senescent cell antigen-like domains 1, DNAJC30 DnaJ (Hsp40) homolog, subfamily C, member 30