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Table 3 Top 10 down- and up-regulated genes in treatment group compared to control group

From: High concentrations of atmospheric ammonia induce alterations of gene expression in the breast muscle of broilers (Gallus gallus) based on RNA-Seq

Gene ID Gene symbol Fold change
Down-regulated genes Down
 NM_001199909.1 PDK4 30.4
 XM_004940680.1 FHL1 23.5
 NM_001277411.1 CA3 18.1
 NM_001167752.2 MB 17.3
 XM_004937471.1 PFKFB3 13.0
 XM_004937841.1 MYBPC1 a 12.4
 XM_416332.4 MYBPC1 b 11.8
 NM_001005431.1 FKBP5 11.4
 NM_001030956.1 FBXO32 9.8
 XM_416965.4 METTL21C 8.5
Up-regulated genes Up
 XM_004950318.1 LOC101748351 11.4
 XM_419014.3 SBK2 7.0
 XM_004938015.1 CYB5R3 5.8
 XM_417174.4 DCUN1D5 4.8
 NM_204672.1 SNCG 4.8
 NM_001007477.3 LOC396531 4.0
 XM_004944616.1 LOC770936 3.6
 XM_419574.4 C1ORF96 3.4
 NM_001001766.1 LIMS1 3.4
 XM_004946388.1 DNAJC30 3.4
  1. PDK4, pyruvate dehydrogenase kinase, isozyme 4, FHL1 four and a half LIM domains 1 CA3, carbonic anhydrase III, muscle specific, MB myoglobin, PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3, MYBPC1 a myosin binding protein C, slow type, transcript variant X1, MYBPC1 b myosin binding protein C, slow type, transcript variant X2, FKBP5 FK506 binding protein 5, FBXO32 F-box protein 32, METTL21C methyltransferase like 21C, LOC101748351 spindle and kinetochore-associated protein 1-like, SBK2 SH3-binding domain kinase family, member 2, CYB5R3 cytochrome b5 reductase 3, DCUN1D5 DCN1, defective in cullin neddylation 1, domain containing 5, SNCG synuclein, gamma (breast cancer-specific protein 1), LOC396531 parvalbumin, LOC770936 serine/threonine-protein kinase SRPK3-like, C1ORF96 chromosome 3 open reading frame, human C1orf96, LIMS1 LIM and senescent cell antigen-like domains 1, DNAJC30 DnaJ (Hsp40) homolog, subfamily C, member 30