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Table 1 Characteristic features of AP2/ERF Transcription factor gene family identified in B. distachyon

From: Genome-wide identification, phylogeny and expression analysis of AP2/ERF transcription factors family in Brachypodium distachyon

Gene Name Ggene id Physical position Properties of AP2/ERF proteins Subcell location EST valadation
Chrom no Start position (bp) End Position (bp) Protein length (aa) pI Molecular weight (Da)
BdAP2/ERF001 Bradi1g00670 1 521659 522548 192 8.13 20.2498 Nuclear 17
BdAP2/ERF002 Bradi1g03880 1 2601482 2604919 451 7.23 48.97473 Nuclear 6
BdAP2/ERF003 Bradi1g04110 1 2788453 2789893 302 10.05 32.70946 Nuclear 31
BdAP2/ERF004 Bradi1g07290 1 5105505 5109153 635 6.54 67.00742 Nuclear -
BdAP2/ERF005 Bradi1g18580 1 14895085 14896008 308 6.13 32.25646 Nuclear 8
BdAP2/ERF006 Bradi1g18870 1 15104782 15107266 260 9.9 27.76687 Mitochondrial -
BdAP2/ERF007 Bradi1g23756 1 19130000 19131273 299 9.05 32.04507 Nuclear 5
BdAP2/ERF008 Bradi1g30337 1 25719025 25721056 379 9.07 40.85655 Nuclear 1
BdAP2/ERF009 Bradi1g31337 1 26832687 26835421 467 5.81 50.91159 Nuclear 2
BdAP2/ERF010 Bradi1g33550 1 29119163 29120322 189 5.17 20.18015 Nuclear 2
BdAP2/ERF011 Bradi1g35400 1 30927335 30927973 213 9.16 22.94622 Chloroplast -
BdAP2/ERF012 Bradi1g35410 1 30934707 30935330 208 8.33 22.09309 Nuclear -
BdAP2/ERF013 Bradi1g35420 1 30939140 30939700 187 5.11 20.32711 Cytoplasmic -
BdAP2/ERF014 Bradi1g36590 1 32262325 32263730 226 9.3 23.87795 Nuclear -
BdAP2/ERF015 Bradi1g38110 1 34253209 34254003 265 4.85 27.79697 Chloroplast 1
BdAP2/ERF016 Bradi1g45470 1 43685130 43686821 352 7.79 37.90218 Nuclear 7
BdAP2/ERF017 Bradi1g46120 1 44406118 44407133 236 4.62 24.42913 Chloroplast 2
BdAP2/ERF018 Bradi1g46690 1 45270114 45272465 352 4.78 38.51971 Nuclear 53
BdAP2/ERF019 Bradi1g47480 1 46027554 46028362 154 6.97 16.7786 Nuclear 5
BdAP2/ERF020 Bradi1g48320 1 46956726 46957256 177 9.99 18.74815 Nuclear 23
BdAP2/ERF021 Bradi1g49560 1 48258020 48259205 221 5.32 23.59387 Nuclear 5
BdAP2/ERF022 Bradi1g49570 1 48261395 48262309 225 5.62 23.88046 Nuclear 8
BdAP2/ERF023 Bradi1g53650 1 51957465 51961449 415 6.14 45.29458 Nuclear 9
BdAP2/ERF024 Bradi1g54450 1 52809017 52809787 257 9.32 27.56207 Nuclear 3
BdAP2/ERF025 Bradi1g57560 1 56305875 56308647 605 7.17 63.09426 Nuclear -
BdAP2/ERF026 Bradi1g57970 1 56789254 56789982 243 4.7 26.05227 Chloroplast 9
BdAP2/ERF027 Bradi1g64240 1 63443708 63448081 395 9.09 42.75122 Nuclear -
BdAP2/ERF028 Bradi1g67350 1 65990605 65991651 247 5.25 25.45989 Nuclear 4
BdAP2/ERF029 Bradi1g69207 1 67693295 67697013 628 6.98 67.31695 Nuclear 2
BdAP2/ERF030 Bradi1g71740 1 69679681 69681013 288 6.17 31.22614 Nuclear 7
BdAP2/ERF031 Bradi1g72450 1 70182711 70183727 339 4.78 35.80922 Nuclear 63
BdAP2/ERF032 Bradi1g72457 1 70186902 70188241 308 5.82 32.56157 Chloroplast 10
BdAP2/ERF033 Bradi1g72890 1 70503793 70507456 526 7.82 55.3123 Nuclear 10
BdAP2/ERF034 Bradi1g72990 1 70580747 70581774 331 6.41 34.74665 Nuclear 4
BdAP2/ERF035 Bradi1g75040 1 72026796 72027191 132 6.61 14.16364 Nuclear 7
BdAP2/ERF036 Bradi1g77120 1 73494001 73494771 257 5.43 27.522 Chloroplast 8
BdAP2/ERF037 Bradi2g02100 2 1434535 1436793 337 4.77 36.11855 Nuclear 14
BdAP2/ERF038 Bradi2g02710 2 1905801 1907344 364 7.16 39.28463 Nuclear 17
BdAP2/ERF039 Bradi2g02720 2 1921269 1922752 365 9.96 38.9569 Chloroplast 14
BdAP2/ERF040 Bradi2g04000 2 2818870 2820722 280 5.97 30.81911 Nuclear 1
BdAP2/ERF041 Bradi2g06180 2 4632942 4633697 252 4.8 26.7444 Nuclear -
BdAP2/ERF042 Bradi2g07357 2 5714188 5715258 357 4.85 38.60973 Nuclear 9
BdAP2/ERF043 Bradi2g09434 2 7714796 7719951 1338 5.98 148.56946 Nuclear 2
BdAP2/ERF044 Bradi2g11890 2 10206158 10207184 198 6.19 21.45306 Nuclear 57
BdAP2/ERF045 Bradi2g15847 2 14025073 14025927 285 9.51 30.25695 Nuclear 7
BdAP2/ERF046 Bradi2g17610 2 15668356 15669979 409 9.64 43.71991 Nuclear 29
BdAP2/ERF047 Bradi2g18570 2 16501499 16503701 454 8.62 48.82772 Chloroplast -
BdAP2/ERF048 Bradi2g21060 2 18434490 18435619 237 8.87 23.84977 Nuclear 19
BdAP2/ERF049 Bradi2g21067 2 18444903 18445651 196 10.25 20.59425 Nuclear 4
BdAP2/ERF050 Bradi2g24170 2 22011630 22012545 228 6.51 23.49464 Nuclear 15
BdAP2/ERF051 Bradi2g25050 2 22846421 22847117 180 9.63 19.10829 Nuclear -
BdAP2/ERF052 Bradi2g26987 2 25743726 25748213 394 7.6 43.00918 Chloroplast -
BdAP2/ERF053 Bradi2g27920 2 26951955 26953071 169 6.63 17.67988 Chloroplast 10
BdAP2/ERF054 Bradi2g29960 2 29508803 29511680 382 5 41.65054 Nuclear 15
BdAP2/ERF055 Bradi2g31480 2 31231590 31233055 272 8.54 29.35912 Nuclear 5
BdAP2/ERF056 Bradi2g37800 2 38179562 38184091 494 6.48 53.7679 Nuclear 12
BdAP2/ERF057 Bradi2g45530 2 45915509 45916627 301 4.44 31.9448 Nuclear 9
BdAP2/ERF058 Bradi2g47220 2 47558425 47559938 404 9.4 42.57902 Chloroplast 32
BdAP2/ERF059 Bradi2g48130 2 48444901 48447985 349 9.12 39.41296 Mitochondrial -
BdAP2/ERF060 Bradi2g52370 2 51766250 51767401 244 9.57 25.15542 Nuclear 9
BdAP2/ERF061 Bradi2g52380 2 51772580 51773238 172 10.25 18.47806 Nuclear -
BdAP2/ERF062 Bradi2g53070 2 52290848 52293688 436 8.91 47.4695 Nuclear -
BdAP2/ERF063 Bradi2g56140 2 54552519 54554079 252 7.28 26.8432 Nuclear 19
BdAP2/ERF064 Bradi2g57200 2 55409637 55410303 147 6.61 15.52733 Nuclear 6
BdAP2/ERF065 Bradi2g57747 2 55829067 55832804 628 6.17 66.83063 Nuclear 1
BdAP2/ERF066 Bradi2g60331 2 57699689 57700420 244 5.18 25.33294 PlasmaMembrane 18
BdAP2/ERF067 Bradi2g60340 2 57707368 57708090 241 4.9 25.10965 Chloroplast 21
BdAP2/ERF068 Bradi2g61630 2 58640558 58642834 331 11.63 35.95634 Nuclear 17
BdAP2/ERF069 Bradi3g04370 3 2981846 2982121 92 10.92 9.77404 Nuclear -
BdAP2/ERF070 Bradi3g04380 3 2988281 2989361 118 9.69 12.80229 Nuclear -
BdAP2/ERF071 Bradi3g04410 3 3030811 3031468 194 6.58 19.75096 Nuclear 9
BdAP2/ERF072 Bradi3g06562 3 4743747 4744779 195 5.32 20.50215 Nuclear 3
BdAP2/ERF073 Bradi3g07450 3 5592374 5593517 212 9.07 22.84071 Nuclear 20
BdAP2/ERF074 Bradi3g08790 3 6915336 6916085 250 5.5 26.42149 Nuclear 2
BdAP2/ERF075 Bradi3g12565 3 11243949 11244320 124 8.85 13.81715 Nuclear 14
BdAP2/ERF076 Bradi3g12680 3 11374939 11375580 214 8.74 22.85931 Nuclear -
BdAP2/ERF077 Bradi3g15880 3 14106918 14109546 288 5.41 31.29551 Nuclear 2
BdAP2/ERF078 Bradi3g18070 3 16466074 16466826 171 10.58 17.59787 Nuclear 8
BdAP2/ERF079 Bradi3g24000 3 23546847 23547533 229 8.73 24.80911 Nuclear 4
BdAP2/ERF080 Bradi3g27690 3 28745318 28745683 122 5.57 12.79902 Cytoplasmic 2
BdAP2/ERF081 Bradi3g31600 3 33875837 33876445 203 5.26 21.76436 Chloroplast 8
BdAP2/ERF082 Bradi3g33355 3 35731449 35732636 264 4.9 27.94319 Nuclear 3
BdAP2/ERF083 Bradi3g33670 3 36046660 36047028 123 10.08 13.23904 Nuclear -
BdAP2/ERF084 Bradi3g35560 3 37854781 37856423 275 9.46 29.16776 Nuclear 38
BdAP2/ERF085 Bradi3g36820 3 39192052 39195892 376 7.09 41.41683 Nuclear -
BdAP2/ERF086 Bradi3g37544 3 40042914 40043558 215 4.89 22.74426 Nuclear -
BdAP2/ERF087 Bradi3g38140 3 40608825 40610019 280 5.69 30.34868 Nuclear 24
BdAP2/ERF088 Bradi3g41543 3 43477691 43479816 236 6.71 25.05387 Nuclear 4
BdAP2/ERF089 Bradi3g41546 3 43481400 43482857 234 8.44 24.97712 Chloroplast -
BdAP2/ERF090 Bradi3g42627 3 44115159 44119544 487 8.75 53.34822 Chloroplast -
BdAP2/ERF091 Bradi3g43822 3 45506144 45512571 276 9.2 31.0089 Nuclear 21
BdAP2/ERF092 Bradi3g44470 3 46345345 46346091 249 5.07 26.56773 Nuclear 13
BdAP2/ERF093 Bradi3g45997 3 47939264 47939779 172 5.2 18.7198 Nuclear -
BdAP2/ERF094 Bradi3g47610 3 49227063 49228217 308 6.97 32.78146 Nuclear 1
BdAP2/ERF095 Bradi3g48697 3 50080298 50084464 690 6.11 73.30758 Nuclear -
BdAP2/ERF096 Bradi3g49810 3 51052812 51054767 437 5.72 47.32396 Nuclear 22
BdAP2/ERF097 Bradi3g50490 3 51687040 51688418 297 6.32 30.96065 Nuclear 24
BdAP2/ERF098 Bradi3g50620 3 51763593 51764381 263 5.44 27.54566 Nuclear 2
BdAP2/ERF099 Bradi3g50630 3 51784618 51785497 238 5.35 24.99462 Nuclear 7
BdAP2/ERF100 Bradi3g51610 3 52662982 52664420 286 4.77 29.4364 Nuclear -
BdAP2/ERF101 Bradi3g51630 3 52685121 52686098 228 5.87 24.17896 Nuclear 5
BdAP2/ERF102 Bradi3g54160 3 54676859 54677475 169 8.8 18.11231 Nuclear 6
BdAP2/ERF103 Bradi3g57360 3 57003839 57004549 237 5.39 25.75201 Chloroplast 5
BdAP2/ERF104 Bradi3g57867 3 57514740 57522455 545 6.05 58.32911 Chloroplast 49
BdAP2/ERF105 Bradi3g58015 3 57607422 57608473 259 5.54 27.34452 Extracellular 9
BdAP2/ERF106 Bradi3g58980 3 58281872 58283733 316 7.02 33.64749 Nuclear 33
BdAP2/ERF107 Bradi3g59300 3 58524999 58529801 373 5.87 40.81537 Nuclear 8
BdAP2/ERF108 Bradi3g60120 3 59149405 59152513 307 4.76 33.5793 Chloroplast 10
BdAP2/ERF109 Bradi4g21265 4 24609196 24609797 193 5 20.80231 Cytoplasmic -
BdAP2/ERF110 Bradi4g27850 4 33135019 33136560 315 4.61 34.73159 Nuclear 3
BdAP2/ERF111 Bradi4g29010 4 34421980 34423859 283 6.09 30.38067 Nuclear 25
BdAP2/ERF112 Bradi4g30617 4 36372483 36375685 394 7.19 42.82752 Chloroplast -
BdAP2/ERF113 Bradi4g31040 4 36772794 36775742 402 4.71 43.41933 Nuclear 18
BdAP2/ERF114 Bradi4g35570 4 40939109 40939843 245 5.63 26.34075 Chloroplast 8
BdAP2/ERF115 Bradi4g35580 4 40942477 40943253 259 5.89 27.62901 Nuclear 2
BdAP2/ERF116 Bradi4g35590 4 40947469 40948215 249 4.99 26.7398 Nuclear 9
BdAP2/ERF117 Bradi4g35600 4 40952136 40952876 247 4.72 26.38781 Chloroplast 4
BdAP2/ERF118 Bradi4g35610 4 40959730 40960464 245 5.58 25.92315 Nuclear 6
BdAP2/ERF119 Bradi4g35620 4 40963208 40963969 254 4.94 26.84695 Chloroplast 4
BdAP2/ERF120 Bradi4g35630 4 40965956 40967004 255 5.09 26.88492 Chloroplast 7
BdAP2/ERF121 Bradi4g35650 4 40976869 40977919 239 4.66 25.76346 Nuclear 36
BdAP2/ERF122 Bradi4g38930 4 43634131 43635066 312 6.66 33.31991 Nuclear 14
BdAP2/ERF123 Bradi4g43877 4 47462247 47467299 421 5.46 45.50805 Nuclear 2
BdAP2/ERF124 Bradi5g08380 5 11092852 11094953 286 9.92 30.21775 Nuclear 9
BdAP2/ERF125 Bradi5g14960 5 18387279 18391400 687 5.99 71.21576 Nuclear -
BdAP2/ERF126 Bradi5g16450 5 19777125 19778588 488 8.34 51.67208 Nuclear 11
BdAP2/ERF127 Bradi5g17480 5 20740745 20742261 290 6.34 30.56629 Nuclear 33
BdAP2/ERF128 Bradi5g17490 5 20752451 20753777 365 5.04 38.57791 Nuclear 1
BdAP2/ERF129 Bradi5g17610 5 20857144 20858031 296 5.4 31.03794 Nuclear 2
BdAP2/ERF130 Bradi5g17620 5 20862925 20863756 252 5.23 26.4537 Chloroplast 3
BdAP2/ERF131 Bradi5g17630 5 20867545 20868171 209 5.96 22.66944 Chloroplast -
BdAP2/ERF132 Bradi5g17640 5 20872897 20873850 212 5.21 22.43383 Nuclear -
BdAP2/ERF133 Bradi5g18850 5 21957497 21958102 202 5.22 20.90808 Nuclear -
BdAP2/ERF134 Bradi5g21250 5 23939710 23940850 217 9.69 22.12031 Nuclear 53
BdAP2/ERF135 Bradi5g24100 5 25842335 25845739 467 6.71 49.18327 Nuclear 2
BdAP2/ERF136 Bradi5g24110 5 25859990 25861523 250 9.55 26.88308 Nuclear 16
BdAP2/ERF137 Bradi5g24360 5 26013512 26017700 522 6.23 55.54319 Nuclear -
BdAP2/ERF138 Bradi5g24700 5 26290017 26290721 143 6.29 15.30613 Nuclear -
BdAP2/ERF139 Bradi5g24710 5 26293257 26294078 163 8.89 17.6381 Mitochondrial -
BdAP2/ERF140 Bradi5g24720 5 26295256 26295857 144 6.09 15.98271 Nuclear -
BdAP2/ERF141 Bradi5g25570 5 26828492 26829400 188 8.35 19.37177 Nuclear 11