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Table 5 Number of differentially expressed transcription factors (TFs) on NL1-I and BCMV-S2 virus infections

From: Dynamic transcriptome profiling of Bean Common Mosaic Virus (BCMV) infection in Common Bean (Phaseolus vulgaris L.)

  NL1-I BCMV-S2
Number of Detected TF Families 33 21
Number of Detected TFs 246 (5.26 %) 101 (4.81 %)
Upregulated 138 (2.95 %) 56 (2.67 %)
Downregulated 108 (2.31 %) 45 (2.14 %)
  1. Significant DE genes (padj < 0.05) were used to identify putative TFs for individual virus treatment. Hidden Markov Motifs (HMM) representing 61 different legume transcription factor families [44] were compared against the DE genes and putative TFs were detected using 90 % sequence homology and e-value ≤ 10−10
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BMC Genomics

ISSN: 1471-2164

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