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Fig. 2 | BMC Genomics

Fig. 2

From: Analysis of ethanol fermentation mechanism of ethanol producing white-rot fungus Phlebia sp. MG-60 by RNA-seq

Fig. 2

Comparison of Phlebia sp. MG-60 and P. chrysosporium orthologs. The X-axis indicates log fold change of Phlebia sp. MG-60, and the Y-axis indicates log fold change of P. chrysosporium. a: Orthologous genes with significantly different expression (FDR < 0.05) in Phlebia sp. MG-60 and P. chrysosporium. Orthologous genes related to glycolysis/gluconeogenesis based on the KEGG pathway database are shown in red, including 1: glucose-6-phosphate 1-epimerase [EC: 5.1.3.15]; 2: phosphoglucomutase [EC: 5.4.2.2]; 3: pyruvate decarboxylase [EC: 4.1.1.1]; 4: phosphoglycerate kinase [EC: 2.7.2.3]; 5: glyceraldehyde 3-phosphate dehydrogenase [EC: 1.2.1.12]; 6: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC: 5.4.2.12]; 7: aldose 1-epimerase [EC: 5.1.3.3]; 8: phosphoenolpyruvate carboxykinase (ATP) [EC: 4.1.1.49]; 9: pyruvate kinase [EC: 2.7.1.40]. b: Significantly differentially expressed in Phlebia sp. MG-60 (FDR < 0.05) but no significant difference for P. chrysosporium (FDR > 0.05) orthologous genes. Orthologous genes related to glycolysis/gluconeogenesis based on the KEGG pathway database are shown in red, including 1: aldehyde dehydrogenase [EC: 1.2.1.3]; 2: fructose-1,6-bisphosphatase I [EC: 3.1.3.11]; 3: pyruvate dehydrogenase E1 component [EC: 1.2.4.1]; 4: glucose-6-phosphate isomerase [EC: 5.3.1.9]; 5: pyruvate dehydrogenase E1 component [EC: 1.2.4.1]; 6: pyruvate dehydrogenase E2 component [EC: 2.3.1.12]; 7: dihydrolipoamide dehydrogenase [EC: 1.8.1.4]; 8: hexokinase [EC: 2.7.1.1]; 9: alcohol dehydrogenase, propanol-preferring [EC: 1.1.1.1]; 10: hexokinase [EC: 2.7.1.1]; 11: fructose-bisphosphate aldolase [EC: 4.1.2.13]; 12: 6-phosphofructokinase [EC: 2.7.1.11]

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