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Table 5 Analysis of microsatellite markers in Spartina alterniflora unigenes

From: Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity

  LC LS RC RS Total
Total no. of sequences analyzed 73,552 68,346 72,199 59,363 273,460
Total size of sequences analyzed (Mbp) 30.34 30.29 23.82 21.02 105.48
Number of SSR containing sequences 3209 3188 1818 1242 9457(3.45 %)
Total number of identified SSR 3685 3654 2115 1351 10805
Number of sequences containing more than 1 SSR 334 343 175 68 920
Frequency of SSR found      1/9.76 kb
Dinucleotide SSR 599 668 588 382 2237 (20.7 %)
Trinucleotide SSR 1378 1341 496 289 3504(32.42 %)
Tetranucleotide SSR 13 25 43 9 90(0.83 %)
Pentanucleotide SSR 8 12 8 10 38(0.35 %)
Hexanucleotide SSR 12 10 8 11 41(0.37 %)