Skip to main content

Table 1 Differentially expressed oral vs. aboral genes

From: A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

ID Annotation Adjusted p-value Concordance Higher activity in Hour of strongest change In side Level of log highest change
v1g28237 Transcription factor sp5 7.14E-07 −0.17115 Oral Hour 24 Oral 2.9849
v1g83478 Lactose-binding lectin l-2- partial 1.66E-07 −0.12819 physa Hour 72 Physa 2.00183
v1g130873 Homeobox protein six3 (Nv-Six3/6) 1.58E-06 −0.12477 physa Hour 24 Physa 2.0107
v1g213735 OtxC 8.12E-11 −0.07607 physa Hour 8 Physa 4.721525
v1g234699 Twist-related protein 2-like 2.02E-08 −0.07025 Oral Hour 24 Oral 7.370836
v1g128302 MoxB 8.11E-07 −0.06785 Oral Hour 24 Oral 5.729278
v1g240144 Predicted protein 1.52E-08 −0.03445 physa Hour 8 Oral 4.599914
v1g187332 Forkhead box protein b1 4.09E-07 −0.02903 Oral Hour 8 Oral 2.974586
v1g236657 Protein 1.72E-06 −0.01588 physa Hour 24 Physa 2.600729
v1g19039 Transcription factor 24-like 2.55E-08 −0.00569 Oral Hour 72 Oral 3.74859
v1g128296 Homeobox protein mox-2-like 4.21E-11 −0.00251 Oral Hour 72 Oral 6.851678
v1g143839 dbh-like 1 1.10E-08 0.00088 physa Hour 24 Physa 5.102618
v1g128275 Homeobox protein mox-1-like 2.02E-07 0.00604 Oral Hour 24 Oral 4.413361
v1g158342 Protein Wnt (Nv-Wnt1) 1.73E-13 0.01381 Oral Hour 72 Oral 5.89264
v1g209762 protein notum homolog 9.33E-08 0.01413 Oral Hour 8 Oral 2.961176
v1g91822 Protein Wnt (Nv-WntA) 7.02E-06 0.05128 Oral Hour 24 Oral 4.354627
v1g204932 Tryptophanase 2.68E-13 0.05226 Oral Hour 24 Oral 4.082363
v1g209293 Protein 8.58E-08 0.06309 Oral Hour 72 Oral 5.050021
v1g128289 Homeobox protein mox-1 1.36E-14 0.07061 Oral Hour 24 Oral 6.652978
v1g90018 Serine threonine-protein kinase nek10 2.42E-06 0.09293 Oral Hour 24 Oral 1.887118
v1g99612 Transcription factor sp9 4.12E-06 0.10237 Oral Hour 24 Oral 2.906741
v1g82259 Camp-dependent protein kinase regulatory chain 2.54E-07 0.10922 physa Hour 24 Physa 4.219632
v1g79707 Diencephalon mesencephalon homeobox protein 1(Nv-DMBXa) 4.70E-10 0.11036 Oral Hour 72 Oral 4.284746
v1g235967 Transcription factor sox-14 (Nv-Sox1) 3.13E-06 0.11449 Oral Hour 24 Oral 2.215064
v1g242584 Protein Wnt (Nv-Wnt2) 6.25E-14 0.12361 Oral Hour 72 Oral 3.400295
v1g205060 Tetratricopeptide repeat protein 34-like 4.30E-09 0.12377 physa Hour 8 Physa 2.469459
v1g211802 Glutamine-rich protein 2 1.75E-06 0.12696 physa Hour 72 Physa 4.404417
v1g101383 A disintegrin and metalloproteinase with thrombospondin motifs 17 6.16E-08 0.13962 Oral Hour 8 Oral 4.0445
v1g33652 NA 0 0.1429 Oral Hour 24 Oral 4.929053
v1g25772 NA 4.83E-11 0.1469 Oral Hour 24 Oral 5.117176
v1g194914 Protein Wnt (Nv-Wnt4) 0 0.15175 Oral Hour 24 Oral 7.726335
v1g121336 Protein apcdd1 1.01E-06 0.15885 physa Hour 8 Physa 2.812523
v1g228590 Cathepsin l-like 0 0.16234 Oral Hour 24 Oral 5.303226
v1g247951 Chitin deacetylase 9 precursor 2.24E-12 0.17734 Oral Hour 72 Oral 5.023155
v1g100430 Protein wntless homolog isoform 1 0 0.18089 Oral Hour 72 Oral 3.727024
v1g196726 Integrin alpha-8 1.64E-11 0.19342 Oral Hour 24 Oral 2.564167
  1. Some of the most prominently DE genes of the screen are presented sorted by their concordance correlation coefficient (CCC). The column ‘higher activity’ notes the side of regeneration in which there was a higher level of expression in most of the sampled hours. The column ‘hour of strongest change’ indicates the hour with the largest change in expression levels between hours of regeneration and notes the side of the strongest change (log2) in expression level. Wnt family genes are marked in bold. Homeobox genes are underlined