Fig. 2
From: An analytical workflow for accurate variant discovery in highly divergent regions
Plotting SNP and INDEL calling sensitivity as a function of coverage depth. X-axis indicates coverage depth in simulation and Y-axis denotes sensitivity. a-b SNP calling sensitivity at 5 and 10Â % divergence. c-d INDEL calling sensitivity at 5 and 10Â % divergence. The 20 mapper-caller combinations are color-coded, using color gradient to differentiate the four mappers combined with the same caller. GATK HC GATK HaplotypeCaller; GATK UG GATK UnifiedGenotyper