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Table 5 P-values for each model condition and metric for the hypothesis test that P+BAli-Phy outperforms P(default) with respect to tree accuracy

From: Scaling statistical multiple sequence alignment to large datasets

 

Delta-RF

Delta-RF

 

Data

RAxML

FastTree-2

 

Indelible M2

0.021

0.014

 

RNAsim

0.677

0.660

 

Rose L1

0.036

0.054

 

Rose M1

0.136

0.030

 

Rose S1

0.010

0.007

 
  1. Values are based on one-sided Student’s T-test for differences between the two methods on each replicate. Bolded values indicate significant differences using a Benjamini-Hochberg procedure to control the false discovery rate at 5 % [33]
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BMC Genomics

ISSN: 1471-2164

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