Module | Part. M
| Skew | Dif(M
⋆) | Dif(M) | # T
⋆:#T
| #G/#MG | Figure |
|---|
51 | 10 | 0.734 | –0.276 | 0.457 | 1:3 | 19/31 |
2
|
59 | 112 | 0.727 | –0.241 | 0.486 | 9:1 | 2/2 |
3
|
55 | 4 | 0.726 | –0.112 | 0.615 | 14:12 | 1/1 |
4
|
40 | 20 | 0.699 | –0.712 | –0.013 | 2:33 | 3/12 |
5
|
56 | 113 | 0.697 | –0.165 | 0.531 | 4:12 | 1/1 |
6
|
42 | 113 | 0.655 | –0.147 | 0.507 | 6:9 | 1/1 | – |
52 | 4 | 0.642 | –0.037 | 0.604 | 6:2 | 7/24 | – |
16 | 112 | 0.630 | –0.020 | 0.650 | 18:1 | 16/24 | – |
31 | 112 | 0.600 | 0.098 | 0.699 | 19:2 | 2/2 | – |
35 | 4 | 0.598 | –0.012 | 0.586 | 10:17 | 1/1 | – |
53 | 112 | 0.583 | 0.003 | 0.612 | 21:1 | 20/24 | – |
62 | 20 | 0.580 | –0.426 | 0.154 | 5:3 | 27/74 | – |
- The first row (Module 51 and branch 10) describes the max block found for this module and branch. The column “Skew” is the max block’s skewness score skew(T,T
⋆,G)=0.734; next is the difference between the averages of T and T
∗ on the species in M
∗, i.e., Dif(M
⋆))=0.457, followed by the corresponding difference for the species in M is Dif(M)=−0.276. The column # T
⋆:#T reports the numbers of transcription factors in T
∗ and T; and the column #G/#MG reports the number of genes in the regulon compared with the number in the module. The column “Figure” lists the figure number corresponding to the module or ’-’ for modules without figures. The cases shown have the highest skew scores and are listed in order of those scores. When a module has similar results for branches that only differ slightly, we show only the one whose block has the highest skewness. A more extensive set of data is included in Additional file 5: Supplementary material
