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Table 2 Summary of de novo assembly of transcriptome

From: De novo assembly and transcriptome characterization of spruce dwarf mistletoe Arceuthobium sichuanense uncovers gene expression profiling associated with plant development

 

Transcripts

Unigenes

Total number

331,347

226,687

Average length (bp)

691

533

Minimum length (bp)

201

201

Maximum length (bp)

24,940

24,940

Number, ≤500 bp

201,559

164,554

Number, >500 bp

129,788

62,133

N50a (bp)

1098

690

N90b (bp)

273

237

Total nucleotides

228,836,465

120,878,370

  1. aN50 is defined as the length of the largest contig from all the contigs ranked smallest to largest that represents 50 % of the assembly lengthy
  2. bN90 is defined as the length of the smallest transcript in the sorted list of all transcripts where the cumulative length from the largest transcript to the smallest transcript is at least 90 % of the total length