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Table 6 Most specific GO in mite genes that are up-regulated in the A. mellifera host, cluster 2 and 3

From: Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

GO-ID Term Category P-Value Am-Up seq. counta Ref seq. countb
Cluster 2 (208 CDEG)
 GO:0005746 mitochondrial respiratory chain C 0.000198 4 61
 GO:0016272 prefoldin complex C 0.000182 2 6
 GO:0003006 developmental process involved in reproduction P 0.000016 24 1332
 GO:0010029 regulation of seed germination P 0.000233 2 7
 GO:0007281 germ cell development P 0.000119 14 665
 GO:1990204 oxidoreductase complex C 0.000855 5 85
 GO:0061028 establishment of endothelial barrier P 0.000476 3 16
 GO:0005801 cis-Golgi network C 0.000169 3 26
 GO:0048569 post-embryonic organ development P 0.000254 11 489
 GO:0048610 cellular process involved in reproduction P 0.000267 18 1065
Cluster 3 (56 CDEG)
 GO:0097136 Bcl-2 family protein complex C 0.000016 1 1
 GO:0051400 BH domain binding F 0.000057 1 6
 GO:0001783 B cell apoptotic process P 0.000089 1 10
 GO:0004301 epoxide hydrolase activity F 0.000033 1 3
 GO:0004463 leukotriene-A4 hydrolase activity F 0.000041 1 4
 GO:0060509 Type I pneumocyte differentiation P 0.000049 1 5
 GO:0019370 leukotriene biosynthetic process P 0.000057 1 6
 GO:0016803 ether hydrolase activity F 0.000073 1 8
 GO:0016801 hydrolase activity, acting on ether bonds F 0.000097 1 11
 GO:0006691 leukotriene metabolic process P 0.000138 1 16
  1. Fisher’s exact test showing enriched GO terms in mite genes that are up-regulated in A. mellifera host (cluster 2 and 3). For a complete list and gene ID see (Additional file 7: Table S7; Additional file 8: Table S9). a208 and 56 genes in each test set, respectively. bnumber of times the GO was identified in reference set of 37,661 genes