Single nucleotide variant discovery of highly inbred Leghorn and Fayoumi chicken breeds using pooled whole genome resequencing data reveals insights into phenotype differences

Table 8 Gene ontology terms from REViGO for variant regions with greatest difference (F _ST = 1)

Description	Frequency	Uniqueness
Immune system process	0.86 %	0.99
Cellular protein modification process	2.99 %	0.83
Behavior	0.09 %	0.92
Metabolic process	78.07 %	1
Cellular process	70.74 %	1
Cellular component organization	4.20 %	0.95
Sexual reproduction	0.08 %	0.99
Biological adhesion	2.09 %	0.99
Signaling	5.13 %	0.99
Multicellular organismal process	1.33 %	0.99
Developmental process	1.67 %	0.99
Growth	0.14 %	0.99
Locomotion	3.09 %	0.99
Single-organism process	25.74 %	1
Single-multicellular organism process	1.30 %	0.8
Positive regulation of biological process	0.84 %	0.76
Anatomical structure development	1.38 %	0.89
Response to stimulus	10.51 %	0.99
Localization	17.22 %	1
Multi-organism process	4.65 %	0.99

REViGO visualization showing the most unique GO terms represented by the F _ST list of genes for the comparison of the population structures of the Fayoumi and Leghorn. The list reveals terms such as immune system processes and sexual reproduction that represent the traits for which each breed is characterized

ISSN: 1471-2164