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Table 6 Common Quantitative trait loci (QTL) identified for grain color evaluated in 2010 field (2010Enid) and 2011 greenhouse (GH) experiments and pre-harvest sprouting resistance evaluated in Manhattan (MH) and Hays in 2013 and 2014 experiments, respectively

From: Genome-wide association analysis on pre-harvest sprouting resistance and grain color in U.S. winter wheat

  Grain color PHS resistance
Chromosome Marker name Chromosome position (cM)a 2010Enid 2011GH Mean 2013MH 2013Hays 2014MH 2014Hays Field_BLUP
p R 2 (%)b p R 2 (%)b p R 2 (%)b p R 2 (%)c p R 2 (%)c p R 2 (%)c p R 2 (%)c p R 2 (%)c
3AL Xwmc559-1 107.20 1.25E-04 9.8 5.00E-04 10.6 1.57E-04 10.8 - - 9.00E-04 10.4 - - - - - -
3AL Tamyb10-A1-66 114.02 8.75E-06 7.5 1.86E-04 10.2 2.25E-05 9.4 4.67E-07 12.1 1.82E-05 9.2 3.00E-04 6.8 2.83E-05 8.6 2.01E-06 10.9
3AL Tamyb10-A1-74 114.02 3.12E-06 8.5 6.50E-05 11.1 7.32E-06 10.4 8.07E-07 11.6 3.47E-05 8.6 - - 1.16E-04 7.3 1.12E-05 9.4
3DL BS00067163_51 92.34 5.36E-08 15.0 8.39E-11 23.2 7.49E-10 19.7 7.79E-05 8.3 - - - - - - - -
3DL Tamyb10-D1-93 - 4.31E-11 21.9 3.66E-13 17.5 6.51E-13 21.0 6.00E-04 5.7 3.00E-04 6.7 - - - - - -
1A/1D/3A/5B Xbarc148 - 2.50E-07 16.6 1.03E-06 18.7 2.27E-07 18.4 1.38E-08 22.8 3.38E-05 11.9 - - 2.22E-05 14.5 3.43E-06 14.7
  1. aThe marker positions in a chromosome based on W7984 reference map
  2. bPhenotypic variance explained by a marker that is significantly associated with grain color
  3. cPhenotypic variance explained by a marker that is significantly associated with pre-harvest sprouting resistance