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Table 2 Repetitive content (% occupancy) of BAC clones and type of BAC-FISH signals observed on mitotic chromosomes

From: Expansion of the phosphatidylethanolamine binding protein family in legumes: a case study of Lupinus angustifolius L. FLOWERING LOCUS T homologs, LanFTc1 and LanFTc2

  Contig1 (LanFTc1) Contig2 (LanFTc2)
BAC-FISHa R R R R R R R S S S S S R R R R S
BAC clone 080 K01 008 L15 124 E17 139 P24 140 E06 130 O02 055 I07 133 N08 015 A19 082 M07 006 C24 075 P11 137 O24 071 N21 100 H14 092 M12 042 F24
DNA other - 0.33 - 0.28 0.39 0.44 0.39 0.25 0.34 0.43 0.41 0.47 - - - - -
DNA/EnSpm - - - - - - - 0.40 - - - - 3.35 - - - -
DNA/hAT - - - - - - - 0.12 - - - - 1.54 0.86 - - -
DNA/IS - - - - - - - - - - - - 0.45 - - - -
LINE/L1 0.59 1.11 0.33 0.93 1.10 1.25 1.11 0.98 1.13 1.21 1.15 1.31 - - - - -
LINE/RTE 2.99 1.86 3.61 1.56 2.17 1.74 1.55 1.39 1.88 2.38 0.42 0.48 0.31 0.75 0.84 1.24 1.30
LTR/Copia 14.93 17.94 9.77 11.96 16.61 18.42 16.81 13.85 14.43 17.81 17.40 16.34 22.81 25.10 29.69 35.88 18.43
LTR/Gypsy 17.10 14.20 20.66 16.02 9.16 10.41 9.27 12.89 11.67 10.07 9.59 4.97 7.59 15.61 17.53 11.10 27.26
Simple repeat 0.82 1.26 0.99 1.26 1.50 1.52 1.52 1.34 1.47 1.47 1.57 1.63 1.79 1.98 1.71 1.59 2.26
Total repeats 36.43 36.71 35.36 32.01 30.92 33.78 30.66 31.22 30.92 33.36 30.54 25.21 37.83 44.31 49.77 49.81 49.25
  1. aR - repetitive BAC-FISH signals dispersed over numerous chromosomes. S – single-locus BAC-FISH signals