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Table 2 Repetitive content (% occupancy) of BAC clones and type of BAC-FISH signals observed on mitotic chromosomes

From: Expansion of the phosphatidylethanolamine binding protein family in legumes: a case study of Lupinus angustifolius L. FLOWERING LOCUS T homologs, LanFTc1 and LanFTc2

 

Contig1 (LanFTc1)

Contig2 (LanFTc2)

BAC-FISHa

R

R

R

R

R

R

R

S

S

S

S

S

R

R

R

R

S

BAC clone

080 K01

008 L15

124 E17

139 P24

140 E06

130 O02

055 I07

133 N08

015 A19

082 M07

006 C24

075 P11

137 O24

071 N21

100 H14

092 M12

042 F24

DNA other

-

0.33

-

0.28

0.39

0.44

0.39

0.25

0.34

0.43

0.41

0.47

-

-

-

-

-

DNA/EnSpm

-

-

-

-

-

-

-

0.40

-

-

-

-

3.35

-

-

-

-

DNA/hAT

-

-

-

-

-

-

-

0.12

-

-

-

-

1.54

0.86

-

-

-

DNA/IS

-

-

-

-

-

-

-

-

-

-

-

-

0.45

-

-

-

-

LINE/L1

0.59

1.11

0.33

0.93

1.10

1.25

1.11

0.98

1.13

1.21

1.15

1.31

-

-

-

-

-

LINE/RTE

2.99

1.86

3.61

1.56

2.17

1.74

1.55

1.39

1.88

2.38

0.42

0.48

0.31

0.75

0.84

1.24

1.30

LTR/Copia

14.93

17.94

9.77

11.96

16.61

18.42

16.81

13.85

14.43

17.81

17.40

16.34

22.81

25.10

29.69

35.88

18.43

LTR/Gypsy

17.10

14.20

20.66

16.02

9.16

10.41

9.27

12.89

11.67

10.07

9.59

4.97

7.59

15.61

17.53

11.10

27.26

Simple repeat

0.82

1.26

0.99

1.26

1.50

1.52

1.52

1.34

1.47

1.47

1.57

1.63

1.79

1.98

1.71

1.59

2.26

Total repeats

36.43

36.71

35.36

32.01

30.92

33.78

30.66

31.22

30.92

33.36

30.54

25.21

37.83

44.31

49.77

49.81

49.25

  1. aR - repetitive BAC-FISH signals dispersed over numerous chromosomes. S – single-locus BAC-FISH signals
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