Table 2 The computation time for S2SEM and QTLnet methods of one replicate for the simulations of common variants
From: A new statistical framework for genetic pleiotropic analysis of high dimensional phenotype data
Time(s)/replicate | Phenotypes 10, Common SNPs 30 | Phenotypes 30, Common SNPs 100 | Phenotypes 100, Common SNPs 1000 | ||
|---|---|---|---|---|---|
Sample | S2SEM | QTLnet | S2SEM | QTLnet | S2SEM |
100 | 1.36 | 1320.652 | 27.7625 | 12027.462 | 273.873 |
300 | 1.81063 | 1398.773 | 14.7055 | 12700.457 | 123.936 |
500 | 2.37817 | 1476.835 | 19.29666 | 13373.882 | 143.593 |
800 | 3.45897 | 1554.466 | 26.23715 | 14047.312 | 170.799 |
1100 | 4.70929 | 1632.869 | 36.27526 | 14720.764 | 309.795 |
1400 | 5.89862 | 1710.212 | 43.54272 | 15394.201 | 218.933 |
1700 | 7.49375 | 1788.496 | 55.96197 | 16067.649 | 285.213 |
2000 | 9.03683 | 1866.751 | 64.34067 | 16741.084 | 311.480 |
2300 | 11.21737 | 1944.063 | 78.7097 | 17414.523 | 375.167 |
2600 | 12.93615 | 2022.158 | 87.91563 | 18087.964 | 625.959 |
2900 | 15.51082 | 2100.947 | 105.14222 | 18761.402 | 724.829 |