Fig. 2

a A Venn-diagram depicting the overlap in the number of transcribed genes (normalised read counts ≥ 1) in populations of GFP+ protoplasts (23,053 transcribed genes in total), GFP– protoplasts (24,558 in total) and unsorted ap1 cal inflorescence apices (21,870 in total). b Summary of the number of differentially transcribed genes at different probability and cut-off values (p ≤ 0.01; p ≤ 0.01and FC ≥ 1.5, or p ≤ 0.01 and FC ≥ 2.0) when the GFP+ or GFP– transcriptome was compared with that of the unsorted ap1 cal IM