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Table 3 Upstream differentially expressed transcription regulators and their target genes with fold change (FC) ≥ |3|

From: Prepartum body condition score and plane of nutrition affect the hepatic transcriptome during the transition period in grazing dairy cows

Transcription regulator

FC

Target genes and responses within the specific comparison

B4F125 vs B4F75

  SIM1

−1.980

↑AOX1, ↑CBFB, ↓CD86, ↓GPX3, ↓PKIB, ↑STRN, ↓THEG

  SOX2

−1.766

↑ALB, ↓ANGPT1, ↑APCDD1, ↑BCL9L, ↓CST6, ↓CXCR4, ↓FABP7, ↓MEIS1

  MYOD1

−1.641

↓ACHE, ↓ATP7A, ↓CHRNG, ↓DAG1, ↓RBM38, ↓RYR1, ↑SP1

  ERG

−1.552

↓CXCR4, ↓EZH2, ↑FMNL2, ↓HDAC6, ↓ITGA6, ↑ PTPN4

  LHX1

−1.505

↓SIM1, ↑SOSTDC1, ↓TMIGD1, ↑ZKSCAN1

B5F125 vs B5F75

  CUX1

−2.035

↓ECT2, ↑WNT6