Species |
TLR
|
MyD88
|
NF-κB
|
NLR
|
IL-1R-like |
|---|
A. tenebrosa (1) | 1 | 1 | 1 | 2 | 3 |
A. tenebrosa (2) | 1 | 1 | 1 | 2 | 7 |
A. tenebrosa (3) | 1 | 1 | 1 | 2 | 4 |
A. tenebrosa (4) | 1 | 1 | 1 | 4 | 3 |
A. pallida
| -Ç‚ | 1 | 0* | 2 | 2 |
A. buddemeieri
| 1 | 1 | 1 | 3 | 2 |
A. elegantissima
| 1 | 1 | 1 | 0†| 3 |
A. veratra
| 1 | 1 | 1 | 2 | 4 |
C. polypus (1) | 0 | 1 | 1 | 2 | 3 |
C. polypus (2) | 1 | 1 | 1 | 4 | 5 |
N. annamensis
| 1 | 1 | 1 | 2 | 4 |
N. vectensis
| 1 | 1 | 0* | 3 | 2 |
Telmatactis sp. | 0 | 0 | 1 | 0†| 1 |
- Counts are conservative, i.e., they refer to the number of genes with a complete ORF only, not isoforms or partial genes found in each transcriptome (see Additional file 2: Tables S6 and S7 for gene, isoform and partial gene counts). Genes were considered complete when a full open reading frame was found (start and stop codons) and contained the canonical Pfam domains (see Methods). Shown are the Toll-like receptor (TLR), Nucleotide-binding and Leucine-rich Repeat containing gene family (NLR), Myeloid Differentiation primary response gene 88 (MyD88) and Nuclear Factor kappa-light-chain-enhancer of activated B cells (NF-κB) and Interleukin-1 receptor (IL-1R-like). ǂNo TLR in Aiptasia genome [27]. *NF-κB in Nematostella does not have ankyrin repeats [71]; here NF-κB was only considered complete if it contained the RHD and ankyrin repeats (see Methods). *Aiptasia also has only a RHD-IPT (no ankyrin repeats) containing NF-κB (AIPGENE8848 sp|P19838|NFKB1). †Partial genes found, see Additional file 2: Table S7
