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Table 1 Summary statistics of RNA-Seq for human and mouse cell lines analyzed in this study

From: CASTIN: a system for comprehensive analysis of cancer-stromal interactome

Sample

Species

Cell type

Cell line

Totala

PFb

ExpID-112

Human

PDACc

PANC-1

62106630

43070936

ExpID-114

Human

PDAC

PK-8

58769786

44701524

ExpID-115

Human

PDAC

PK-9

60832395

44822240

ExpID-116

Human

PDAC

PK-45H

31898332

29286400

ExpID-117

Human

PDAC

PK-45P

35500162

32211253

ExpID-118

Human

PDAC

KLM-1

23673045

20778304

ExpID-119

Human

PDAC

MiaPaca-2

15255557

13715276

ExpID-120

Human

PDAC

Capan-1

41776004

35857527

ExpID-121

Human

PDAC

HOPE

21063312

19314964

ExpID-128

Mouse

Endothelial

SVEC4-10

32128404

29780901

ExpID-129

Mouse

Endothelial

IP-1B

34391406

31548417

  1. aTotal Number of reads
  2. bNumber of reads passing Illumina’s filter
  3. cPancreas ductal adenocarcinoma