Skip to main content
Fig. 3 | BMC Genomics

Fig. 3

From: De novo assembly and analysis of changes in the protein-coding transcriptome of the freshwater shrimp Paratya australiensis (Decapoda: Atyidae) in response to acid sulfate drainage water

Fig. 3

An overview of differential expression (DE) of transcripts in response to a 50 % acid drainage water (ADW) or b 100 % ADW according to transcript abundance estimates based on RNA-Seq read coverage. Data represent mean fold-change (log2 scale) relative to the control group, with mean transcript abundance (read coverage) on the x-axis. Transcripts with significant differential abundance relative to controls (P adj < 0.05) are shown in red. c Venn diagram showing the number of transcripts with significantly higher differential abundance and biologically significant fold-difference (>2-fold) relative to control. d Bar chart showing significant enrichment of Gene Ontology (GO) functional terms (Fisher’s exact test FDR < 0.05) in the lists of significantly upregulated transcripts. Panels e and f represent the downregulated transcripts. Details of the transcripts in each GO category along with FDR values are available in Additional file 3

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us