|
Gene
|
Chr
|
Start
|
Stop
|
Strand
|
Control expression (FPKM)
|
Iron deficient expression (FPKM)
|
Log2 fold change
|
CpG site
|
% Methylation difference
|
|
AK5
|
6
|
125,964,963
|
126,223,426
|
−
|
220.095
|
108.314
|
−1.02291
|
126,222,882
|
27.13 %
|
|
COL18A1
|
13
|
218,086,392
|
218,088,850
|
+
|
6.0639
|
16.1761
|
1.41555
|
218,086,634
|
46.84 %
|
|
ENSSSCG00000010493
|
14
|
116,376,967
|
116,425,960
|
−
|
0.787778
|
2.73519
|
1.79578
|
116,377,431
|
25.47 %
|
|
SV2B
|
7
|
93,628,494
|
93,828,585
|
−
|
61.2676
|
31.3412
|
−0.967065
|
93,828,414
|
29.24 %
|
|
UNC5B
|
14
|
80,010,893
|
80,098,908
|
+
|
7.68495
|
12.5631
|
0.709085
|
80,060,756
|
34.05 %
|
|
VWF
|
5
|
67,005,340
|
67,078,256
|
+
|
2.61282
|
9.17948
|
1.81281
|
67,050,813
|
−39.15 %
|
|
HS6ST2
|
X
|
124,748,953
|
125,078,245
|
−
|
21.3711
|
8.641
|
−1.30639
|
125,076,126
|
25.18 %
|
|
HTR2C
|
X
|
108,566,657
|
108,871,722
|
+
|
3.18817
|
6.73597
|
1.07916
|
108,591,537
|
37.11 %
|
|
HTR2C
|
X
|
108,566,657
|
108,871,722
|
+
|
3.18817
|
6.73597
|
1.07916
|
108,591,463
|
−35.23 %
|
|
HTR2C
|
X
|
108,566,657
|
108,871,722
|
+
|
3.18817
|
6.73597
|
1.07916
|
108,564,261
|
−25.29 %
|
|
HTR2C
|
X
|
108,566,657
|
108,871,722
|
+
|
3.18817
|
6.73597
|
1.07916
|
08,564,264
|
−37.58 %
|
|
Gene
|
Chr
|
Start
|
Stop
|
Strand
|
Control expression (FPKM)
|
Iron deficient expression (FPKM)
|
Log2 fold change
|
Non-CpG site
|
% Methylation difference
|
|
MICALL2
|
3
|
1,066,675
|
1,085,568
|
−
|
2.73823
|
6.46233
|
1.23881
|
1,084,014
|
44.53 %
|
- The first 11 lines represent DM CpG sites associated with DEGs, while the last line represents a single DM non-CpG site associated with a DEG. % methylation difference is the observed change in methylation in the deficient group relative to the control group. Log2 fold changes are the observed change in expression in the deficient group relative to the control group. Expression levels are represented as fragments per kilobase of transcript per million fragments mapped (FPKM)
