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Table 1 DM sites associated with DEGs

From: Impact of neonatal iron deficiency on hippocampal DNA methylation and gene transcription in a porcine biomedical model of cognitive development

Gene Chr Start Stop Strand Control expression (FPKM) Iron deficient expression (FPKM) Log2 fold change CpG site % Methylation difference
AK5 6 125,964,963 126,223,426 220.095 108.314 −1.02291 126,222,882 27.13 %
COL18A1 13 218,086,392 218,088,850 + 6.0639 16.1761 1.41555 218,086,634 46.84 %
ENSSSCG00000010493 14 116,376,967 116,425,960 0.787778 2.73519 1.79578 116,377,431 25.47 %
SV2B 7 93,628,494 93,828,585 61.2676 31.3412 −0.967065 93,828,414 29.24 %
UNC5B 14 80,010,893 80,098,908 + 7.68495 12.5631 0.709085 80,060,756 34.05 %
VWF 5 67,005,340 67,078,256 + 2.61282 9.17948 1.81281 67,050,813 −39.15 %
HS6ST2 X 124,748,953 125,078,245 21.3711 8.641 −1.30639 125,076,126 25.18 %
HTR2C X 108,566,657 108,871,722 + 3.18817 6.73597 1.07916 108,591,537 37.11 %
HTR2C X 108,566,657 108,871,722 + 3.18817 6.73597 1.07916 108,591,463 −35.23 %
HTR2C X 108,566,657 108,871,722 + 3.18817 6.73597 1.07916 108,564,261 −25.29 %
HTR2C X 108,566,657 108,871,722 + 3.18817 6.73597 1.07916 08,564,264 −37.58 %
Gene Chr Start Stop Strand Control expression (FPKM) Iron deficient expression (FPKM) Log2 fold change Non-CpG site % Methylation difference
MICALL2 3 1,066,675 1,085,568 2.73823 6.46233 1.23881 1,084,014 44.53 %
  1. The first 11 lines represent DM CpG sites associated with DEGs, while the last line represents a single DM non-CpG site associated with a DEG. % methylation difference is the observed change in methylation in the deficient group relative to the control group. Log2 fold changes are the observed change in expression in the deficient group relative to the control group. Expression levels are represented as fragments per kilobase of transcript per million fragments mapped (FPKM)