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Table 1 Description of cattle populations, SNP marker genotypes and carrier status with respect to the TUBD1 mutation on BTA19

From: Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations

  Fleckvieh Brown Swiss
N. animals 3116 392
Mutation carriers 126 250
% carriers 4.04 % 63.78 %
% non-carriers 95.96 % 36.22 %
SNPs on BTA19 1512 1512
missing rate 5.78 % 4.92 %
SNPs with call-rate <95 % 195 142
SNPs used 1317 1370
average MAF 22.4 % 18.7 %
  1. All animals were genotyped with the Illumina 54 K SNP-chip v2; only SNPs on BTA19 were used in the analysis