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Table 2 Comparison of the frequency of “del-2” genotype across the countries, inferred from the analysis of Arabidopsis 1,001 Genomes Project WGS data and experimentally determined in current study

From: Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location

Country

Number of representing accessions

Frequency of “del-2” genotype

1,001 Genomes Project

This study

1,001 Genomes Projecta

This study

All countries

1135

189

60.61 %

53.44 %

Highly represented countries (listed below):

979

128

64.04 %

56.25 %

 Sweden

243

1

55.97 %

0.00 %

 Spain

180

10

80.56 %

100.00 %

 USA

123

12

86.99 %

58.33 %

 Germany

118

32

46.61 %

37.50 %

 Italy

73

28

47.95 %

53.57 %

 United Kingdom

69

10

71.01 %

60.00 %

 Russia

60

16

80.00 %

75.00 %

 France

45

10

46.67 %

70.00 %

 Czech Republic

40

7

55.00 %

42.86 %

 Bulgaria

28

2

32.14 %

0.00 %

  1. aThe “del-2” genotype was assigned to accessions with at least 80 % missing values in the sequence of the genomic region spanning AT3G18530 and AT3G18535 loci