Table 1 Summary of most abundant transposable element families in all five accessions studied
From: Recent and dynamic transposable elements contribute to genomic divergence under asexuality
Annotations | Macranthoides 11 | Macranthoides 8 | Macranthoides 12 | Macranthoides 13 | Macranthoides 3 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Nb clusters | Nb clusters in model 1-4-6 | Size (Mbp) | % TE | Nb clusters | Nb clusters in model 1-4-6 | Size (Mbp) | % TE | Nb clusters | Nb clusters in model 1-4-6 | Size (Mbp) | % TE | Nb clusters | Nb clusters in model 1-4-6 | Size (Mbp) | % TE | Nb clusters | Nb clusters in model 1-4-6 | Size (Mbp) | % TE | |
Retrotransposons | 76 | 23 | 193.42 | 22.36 | 74 | 20 | 185.16 | 21.41 | 88 | 40 | 272.43 | 31.50 | 78 | 33 | 231.15 | 26.72 | 88 | 37 | 243.70 | 28.17 |
 LTR Elements Ty1/Copia | 38 | 15 | 93.59 | 10.82 | 37 | 12 | 84.05 | 9.72 | 36 | 14 | 97.63 | 11.29 | 36 | 14 | 99.99 | 11.56 | 38 | 16 | 97.32 | 11.25 |
 LTR Elements Ty3/Gypsy | 31 | 6 | 85.86 | 9.93 | 28 | 8 | 78.05 | 9.02 | 46 | 22 | 152.89 | 17.67 | 32 | 14 | 104.24 | 12.05 | 36 | 14 | 103.73 | 11.99 |
 Unclassified LTR | 4 | 0 | 8.96 | 1.04 | 5 | 0 | 13.44 | 1.55 | 5 | 4 | 18.76 | 2.17 | 10 | 5 | 26.92 | 3.11 | 5 | 1 | 11.55 | 1.33 |
 LINE | 1 | 1 | 1.77 | 0.20 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 2 | 0 | 4.52 | 0.52 |
 ParaRetrovirus (Caulimovirus) | 1 | 1 | 1.13 | 0.13 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 |
 Unclassified retrotransposons | 1 | 0 | 2.10 | 0.24 | 4 | 0 | 9.62 | 1.11 | 1 | 0 | 3.15 | 0.36 | 0 | 0 | 0.00 | 0.00 | 7 | 6 | 26.58 | 3.07 |
DNA transposons | 5 | 1 | 10.67 | 1.23 | 6 | 3 | 23.55 | 2.72 | 8 | 3 | 23.16 | 2.68 | 14 | 6 | 41.12 | 4.75 | 12 | 5 | 32.14 | 3.72 |
Unclassified repeats | 12 | 4 | 26.93 | 3.11 | 14 | 8 | 31.51 | 3.64 | 8 | 5 | 16.50 | 1.91 | 8 | 5 | 32.87 | 3.80 | 10 | 7 | 24.25 | 2.80 |
Tandem repeats | 1 | 1 | 1.13 | 0.13 | 0 | 0 | 0.00 | 0.00 | 1 | 1 | 1.65 | 0.19 | 2 | 2 | 2.84 | 0.33 | 1 | 1 | 1.45 | 0.17 |
Ribosomal DNA | 2 | 2 | 4.46 | 0.52 | 2 | 2 | 3.66 | 0.42 | 9 | 9 | 19.98 | 2.31 | 9 | 9 | 18.45 | 2.13 | 7 | 7 | 14.65 | 1.69 |
TOTAL | 96 | 33 | 236.60 | 27.35 | 96 | 33 | 243.87 | 28.19 | 113 | 59 | 333.72 | 38.58 | 111 | 55 | 326.44 | 37.74 | 118 | 57 | 316.19 | 36.55 |