Table 2 Transposable elements exhibiting differences in CG methylation levels
From: Recent and dynamic transposable elements contribute to genomic divergence under asexuality
TE sequence Annotation | Macranthoides 12 | Macranthoides 13 | Macranthoides 3 | Macranthoides 11 | Macranthoides 8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
% CGm | DNA content | RNA content | % CGm | DNA content | RNA content | % CGm | DNA content | RNA content | % CGm | DNA content | RNA content | % CGm | DNA content | RNA content | |
LTR Copia AleII | 0.18 | 19.26 | 751.75 | 0.30 | 20.64 | 36.82 | 0.14 | 22.93 | 392.60 | 0.09 | 72.44 | 205.34 | 0.23 | 48.78 | 228.26 |
LTR Copia Maximus/SIRE | 0.85 | 93.54 | 0.00 | 0.88 | 41.26 | 0.00 | 0.95 | 80.21 | 0.00 | 0.04 | 159.25 | 0.00 | 1.00 | 317.67 | 0.00 |
DNA Transposon PIF-Harbinger | 0.00 | 71.44 | 163.94 | 0.01 | 41.47 | 60.25 | 0.23 | 140.38 | 172.12 | 0.10 | 59.11 | 292.17 | 0.25 | 84.66 | 68.03 |
LTR Gypsy Ogre/Tat | 0.71 | 349.49 | 17.76 | 0.77 | #N/A | #N/A | 0.74 | 337.44 | 8.87 | 0.67 | 403.89 | 0.00 | 0.69 | 808.12 | 0.00 |
DNA transposon hAT-Tip100 | 0.01 | 4.09 | 0.00 | 0.04 | 9.51 | 23.21 | 0.05 | 2.79 | 0.00 | 0.35 | #N/A | #N/A | 0.20 | 18.90 | 0.00 |
LTR Gypsy Ogre/Tat | 0.98 | 349.49 | 17.76 | 0.85 | #N/A | #N/A | 0.15 | 337.44 | 8.87 | 0.00 | 403.89 | 0.00 | 0.00 | 808.12 | 0.00 |
LTR Copia Maximus/SIRE | 0.00 | 37.91 | 0.00 | 0.42 | 39.14 | 0.00 | 0.02 | 30.32 | 0.00 | 0.00 | 45.45 | 0.00 | 0.00 | 45.62 | 0.00 |