From: Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe
Name | Reference | Method | Measured | Computed | Poly(A) enrichment | Quantification |
---|---|---|---|---|---|---|
Young | [52] | rbp1-1 | Half-life | Synthesis rate | oligo(dT) selection | Microarray |
Brown (1) | [50] | rbp1-1 | Half-life | Synthesis ratea | None | Microarray |
Brown (2) | [50] | rbp1-1 | Half-life | Synthesis ratea | oligo(dT) priming | Microarray |
Hughes | [53] | rbp1-1 | Half-life | Synthesis ratea | oligo(dT) selection | Microarray |
Peltz | [51] | rbp1-1 | Half-life | Synthesis ratea | oligo(dT) selection | Microarray |
Pilpel | [54] | rbp1-1 | Half-life | Synthesis ratea | oligo(dT) priming | Microarray |
Perez-Ortin | [77] | GRO | Synthesis rate | Half-life | None | Microarray |
Cramer (1) | [44] | 4sU labeling | Half-life | Synthesis rate | oligo(dT) priming | Microarray |
Weis | [45] | 4tU chase | Half-life | Synthesis ratea | oligo(dT) selection | RNA-seq |
Cramer (2) | [48] | 4tU labeling | Half-life | Synthesis rate | oligo(dT) priming | Microarray |
Struhl | [8] | rbp1-frb | Half-life | Synthesis ratea | oligo(dT) priming | DRS |
Gresham | [46] | 4tU labeling | Half-life | Synthesis rate | None | RNA-seq |
Coller (1) | [10] | rbp1-1 | Half-life | Synthesis ratea | None | RNA-seq |
Coller (2) | [10] | rbp1-1 | Half-life | Synthesis ratea | oligo(dT) selection | RNA-seq |