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Table 4 Association between codon optimality and mRNA synthesis rates

From: Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe

 

cTE

nTE

Total

Observed

Expected

P value

Total

Observed

Expected

P value

S. cerevisiae

Cramer (1)

23

23

9.0

3.5e-13

23

20

11.3

1.5e-05

Cramer (2)

22

17

8.7

1.9e-05

22

16

10.8

1.3e-02

Gresham

23

22

9.0

1.7e-11

23

19

11.3

1.5e-04

S. pombe

Bahler

27

25

12.4

3.8e-10

27

23

15.5

2.6e-04

Mata (5)

21

18

9.6

2.1e-05

21

18

12.0

3.0e-03

Gagneur

26

24

11.9

1.9e-09

26

22

14.9

5.7e-04

  1. Total numbers of codons with positive CPC values (“Total”) among 61 codons, observed numbers of optimal codons with positive CPC values (“Observed”), expected numbers of optimal codons with positive CPC values (“Expected”), and P values from chi-square tests
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BMC Genomics

ISSN: 1471-2164

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