Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia; Coelho, Marco A.; Hittinger, Chris Todd; Sampaio, José P.; Gonçalves, Paula; Libkind, Diego

doi:10.1186/s12864-016-3244-7

Table 2 Comparative analysis of genomes, assemblies, and genes statistics for P. rhodozyma and other fungi

From: Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

										Density			Introns	Intron	Exon	% correct
#	Species	Strain	Size (Mb)	Scaf.	N50 (Kb)	%N	%GC	%repeat	Genes	Gene/Mb	ILG	%ILG	/Gene	Length	Length	CDS
1	Malassezia globosa	CBS 7966	9.0	67	654.6	0.00	52.06	0.98	4195	468.3	2030	48.39	2.1	81	508	99.7
2	Ustilago maydis	strain 521	19.7	274	127.5	0.00	54.03	2.9	6454	327.9	4640	71.89	1.7	229	583	97.9
3	Pseudozyma hubeiensis	SY62	18.4	74	445.6	0.04	56.51	1.21	6313	342.3	4703	74.5	1.7	230	573	99.6
4	Wallemia sebi	CBS 633.66	9.8	56	337.4	0.17	40.01	0.79	5062	515.7	374	7.39	3.2	56	345	99.8
5	Tremella mesenterica	DSM-1558	28.6	45	1622.7	2.28	46.73	6.52	8975	313.4	1101	12.27	5.2	129	287	99
6	Cryptococcus neoformans	JEC21	19.1	14	1439.0	0.01	48.54	5.33	6933	363.9	343	4.95	5.4	69	257	100
7	Cryptococcus gattii	WM276	18.4	14	1333.1	0.07	47.88	4.53	6474	352.3	228	3.52	5.4	70	260	99.7
8	Kwoniella heveanensis	CBS 569	25.3	n.a.	n.a.	0.24	n.a.	n.a.	7702	n.a.	456	5.92	5.9	n.a.	n.a.	n.a.
9	Cryptococcus dejecticola	CBS 10117	23.9	n.a.	n.a.	0.02	n.a.	n.a.	8426	n.a.	554	6.57	5.6	n.a.	n.a.	n.a.
10	Cryptococcus pinus	CBS 10737	20.8	n.a.	n.a.	0.06	n.a.	n.a.	7667	n.a.	403	5.26	5.7	n.a.	n.a.	n.a.
11	Cryptococcus bestiolae	CBS 10118	24.4	n.a.	n.a.	0.06	n.a.	n.a.	8834	n.a.	671	7.6	5.8	n.a.	n.a.	n.a.
12	Kwoniella mangrovensis	CBS 10435	22.7	n.a.	n.a.	0.22	n.a.	n.a.	8242	n.a.	507	6.15	5.8	n.a.	n.a.	n.a.
13	Cryptococcus flavescens	NRRL Y-50378	22.8	712	71.4	0.02	58.47	0.82	8588	376.8	701	8.16	5.5	63	239	94.6
14	Cryptococcus laurentii	RY1	19.1	1152	32.4	0.00	56.13	1	7288	380.7	435	5.97	5.5	63	240	96.7
15	Trichosporon asahii	CBS 8904	25.3	194	3223.9	1.00	59.5	1.52	8520	336.8	1513	17.76	3.2	118	353	97.7
16	Cryptococcus vishniacii	ANT03-052	19.7	50	1080.6	0.22	52.93	0.74	6421	326.1	248	3.86	6	79	243	99.9
17	Phaffia rhodozyma	CBS 6938	19.5	257	2088.2	1.65	47.31	2.52	6260	321	183	2.92	7.4	112	199	97.5
18	Phaffia rhodozyma	CBS 7918 T	18.7	343	104.1	0.00	47.21	2.37	5980	319	97	1.62	7.5	110	199	98.3
19	Phaffia rhodozyma	CRUB 1149	18.9	305	132.9	0.01	47.11	2.47	6016	318	108	1.8	7.5	110	199	98.4
20	Mrakia blollopis	SK-4	30.5	167	1718.1	0.00	53.7	7.46	9335	306.3	229	2.45	8.2	118	177	99.4
21	Schizophyllum commune	H4-8	38.7	25	2560.2	0.15	57.53	4.49	12999	336.1	953	7.33	5.5	85	243	99.9
22	Coprinopsis cinerea	okayama7#130	36.2	67	3468.1	0.00	51.67	5.06	12265	339.3	1017	8.29	5.5	80	251	99.9
23	Stereum hirsutum	FP-91666 SS1	46.5	159	1799.0	1.86	51.31	1.66	13115	282	929	7.08	6.2	99	226	99.6

Scaf. scaffolds, ILG intron less genes, n.a. not available due to the unpublished condition of the assemblies

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