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Table 5 The extremely significant (p ≤ 0.0001) associations between markers and phenotypes

From: A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton

Trait Marker Chr. Position (bp) p value MAF R2 Allelic effect
ELO MGHES-021 A05 12471766 7.48E-14 0.49 0.32 0.306
MUSS275 A06 47495244 3.28E-07 0.50 0.28 0.196
DPL0644c A12 66210831 7.02E-11 0.40 0.30 −0.279
CFB9477 D04 47719839 1.38E-12 0.30 0.31 −0.313
CFB9479 D04 47872771 1.58E-11 0.32 0.31 −0.305
SHIN-0966 D11 61712633 2.30E-09 0.49 0.29 0.223
MUSB0846 D12 20174365 5.74E-12 0.49 0.31 0.274
MIC CFB7672 A09 73256219 5.53E-05 0.21 0.11 −0.089
CFB8181 A12 9895997 7.48E-05 0.50 0.11 −0.138
SFC CFB7265 A07 70370764 6.22E-05 0.12 0.07 −0.266
C2-0114 A07 72331925 2.32E-06 0.14 0.08 −0.240
STR CFB7265 A07 70370764 2.41E-07 0.12 0.15 0.897
DPL0852 A07 71015749 8.34E-08 0.18 0.15 0.689
CFB7266 A07 71506333 4.17E-08 0.23 0.16 −0.701
CFB7267 A07 71510617 1.90E-05 0.18 0.14 0.572
CFB7268 A07 71510635 2.77E-05 0.19 0.14 −0.559
DPL0757 A07 71588662 1.73E-07 0.17 0.15 0.698
CFB7269 A07 72135309 1.45E-06 0.19 0.14 −0.619
C2-0114 A07 72331925 1.07E-10 0.14 0.18 0.868
CFB7271 A07 72856692 1.98E-05 0.13 0.14 0.625
UHM CFB9550 D05 5051755 1.57E-05 0.49 0.14 0.011
CFB11211 D11 24009159 1.07E-06 0.10 0.15 0.018
UI MUSS122 A06 93195954 6.92E-05 0.25 0.07 0.207
SHIN-1138 A07 68260333 4.85E-05 0.19 0.07 −0.010
CFB7265 A07 70370764 2.31E-05 0.12 0.08 0.384
DPL0852 A07 71015749 4.66E-06 0.18 0.08 0.309
DPL0757 A07 71588662 1.36E-05 0.17 0.08 0.304
C2-0114 A07 72331925 2.01E-08 0.14 0.10 0.404
  1. Chr. Chromosome, MAF Minor allele frequency (%)