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Table 2 Crosscheck of cancer-specific co-methylation clusters with genes silenced by promoter hypermethylation in multiple cancer [1, 2, 25, 33, 34]

From: Pan-cancer analysis of frequent DNA co-methylation patterns reveals consistent epigenetic landscape changes in multiple cancers

 

AML

BRCA

COAD

CESC

GBM

LIHC

LUSC

STAD

THCA

OVCA

UCEC

APC

    

X

      

BMAL1

           

BRCA1

        

X

 

X

CDH1

X

X

 

X

 

X

X

X

X

X

X

CDH13

X

      

X

  

X

CDKN2A

 

X

         

CDKN2B

 

X

         

COX2

           

CRABP1

  

X

        

DAPK1

       

X

  

X

ESR1

          

X

GATA5

  

X

   

X

    

GSTP1

      

X

X

X

  

HIC1

           

IGFBP3

  

X

        

MGMT

X

       

X

X

X

MLH1

           

NORE1A

           

P14

           

PYCARD

 

X

         

RARB2

           

RASSF1A

           

TLE1

           

TP73

X

  

X

  

X

    
  1. X indicates a hit in corresponding cancer-specific co-methylation clusters
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BMC Genomics

ISSN: 1471-2164

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