Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

Table 1 Overview of the sequencing and gene models of S. moellendorffii

	Total No.	Root	Leaf	Stem
Raw reads	176,439,664	53,984,797	59,076,216	63,378,651
Clean reads	161,588,604	47,787,568	52,573,643	61,227,393
Mapped reads	105,111,858	25,288,623	37,761,820	42,061,415
Existing gene models	22,285	15,038	15,433	15,133
Novel transcripts	20,882	19,454	19,900	19,675
Novel genes	7930	7435	7552	7524
Antisense TUs	1665	1552	1599	1567
lincRNAs	3660	3, 605	3609	3602
Antisense-lncRNA	762	720	746	723
Total coding genes	30,215	22,473	22,985	22,657

ISSN: 1471-2164