Table 3 Performance on species with symmetrical cGOF
From: GAAP: Genome-organization-framework-Assisted Assembly Pipeline for prokaryotic genomes
| Â | S.pyogenes M1 476 | S.suis SS12 | S.suis A7 | S.suis D12 | S.suis ST1 | S.suis D9 |
|---|---|---|---|---|---|---|
Reference genome, Mb | ||||||
| Â | 1.86 | 2.18 | 2.12 | 2.26 | 2.12 | 2.14 |
Original scaffolds | ||||||
 Number (>300 bp) | 27 | 32 | 41 | 74 | 86 | 67 |
 N50, kp | 123 | 170 | 166 | 73 | 45 | 71 |
Coverage, recovered % (falsely located %) | ||||||
 GAAP | 97.17 (8.78) | 97.28 (1.53) | 94.53 (1.56) | 94.04 (0) | 98.16 (0.69) | 96.10 (0) |
 MeDuSa | 98.99 (9.13) | 98.70 (0.41) | 98.61 (0.04) | 91.37 (37.12) | 94.50 (37.79) | 95.10 (0.20) |
 Ragout | 97.09 (8.78) | 95.76 (38.08) | 93.34 (1.56) | 94.90 (3.05) | 94.36 (6.12) | 95.60 (38.41) |
Errors | ||||||
 GAAP | 6 | 14 | 17 | 29 | 20 | 24 |
 MeDuSa | 9 | 7 | 10 | 26 | 16 | 13 |
 Ragout | 5 | 12 | 7 | 16 | 12 | 12 |
Corrected N50, kb | ||||||
 GAAP | 1292 | 478 | 258 | 284 | 304 | 244 |
 MeDuSa | 964 | 1,433 | 311 | 142 | 208 | 368 |
 Ragout | 1,330 | 414 | 1,212 | 338 | 654 | 398 |