Table 2 Detailed information on the single nucleotide polymorphism (SNP)-based genetic map
Chromosome | Loci | SNP loci | SSR loci | Length (cM) | Average interval (cM) | largest gap (cM) |
|---|---|---|---|---|---|---|
A1 | 190 | 184 | 6 | 133.2 | 0.7 | 10.611 |
A2 | 218 | 216 | 2 | 163.92 | 0.76 | 7.254 |
A3 | 218 | 212 | 6 | 136.23 | 0.63 | 4.376 |
A4 | 169 | 169 | 0 | 160.85 | 0.95 | 7.19 |
A5 | 325 | 325 | 0 | 152.42 | 0.47 | 4.41 |
A6 | 411 | 399 | 12 | 147.89 | 0.36 | 7.192 |
A7 | 305 | 305 | 0 | 152.55 | 0.5 | 4.38 |
A8 | 386 | 386 | 0 | 175.59 | 0.45 | 6.65 |
A9 | 281 | 261 | 20 | 196.04 | 0.7 | 9.152 |
A10 | 258 | 258 | 0 | 146.32 | 0.57 | 4.89 |
A11 | 357 | 349 | 8 | 174.97 | 0.49 | 9.685 |
A12 | 157 | 154 | 3 | 160.88 | 1.03 | 15.37 |
A13 | 325 | 318 | 7 | 147.25 | 0.45 | 5.763 |
At sub-genome | 3600 | 3536 | 64 | 2048.11 | 0.57 | 15.37 |
D1 | 257 | 240 | 17 | 152.01 | 0.59 | 9.246 |
D2 | 268 | 258 | 10 | 177.07 | 0.66 | 9.311 |
D3 | 179 | 179 | 0 | 143.18 | 0.8 | 6.65 |
D4 | 178 | 178 | 0 | 98.98 | 0.56 | 11.19 |
D5 | 252 | 241 | 11 | 190.57 | 0.76 | 13.703 |
D6 | 258 | 241 | 17 | 143.48 | 0.56 | 13.763 |
D7 | 208 | 208 | 0 | 157.77 | 0.76 | 5.48 |
D8 | 257 | 257 | 0 | 143.18 | 0.56 | 5.3 |
D9 | 201 | 189 | 12 | 153.85 | 0.77 | 10.321 |
D10 | 198 | 193 | 5 | 155.65 | 0.79 | 18.24 |
D11 | 112 | 109 | 3 | 174.54 | 1.57 | 8.071 |
D12 | 229 | 229 | 0 | 167.8 | 0.73 | 13.15 |
D13 | 237 | 237 | 0 | 165.79 | 0.7 | 10.72 |
Dt sub-genome | 2834 | 2759 | 75 | 2023.87 | 0.71 | 18.24 |
Summary | 6434 | 6295 | 139 | 4071.98 | 0.63 | 18.24 |