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Table 2 Comparison of the de novo assemblies generated using the Trinity and CLC Genomics Workbench programs

From: Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

  Trinity CLC Genomics Workbench
K-mer (bp) 25 25 45
Total number of contigs 76196 51291 44899
Min contig length (bp) 301 300 300
Max contig length (bp) 7392 6174 5506
Mean contig length (bp) 877 617 551
Median contig length (bp) 637 454 435
N50 (bp) 1152 665 562
Mapped reads (%) 82.94 79.53 80.23