Table 2 Comparison of the de novo assemblies generated using the Trinity and CLC Genomics Workbench programs
| Â | Trinity | CLC Genomics Workbench | |
|---|---|---|---|
K-mer (bp) | 25 | 25 | 45 |
Total number of contigs | 76196 | 51291 | 44899 |
Min contig length (bp) | 301 | 300 | 300 |
Max contig length (bp) | 7392 | 6174 | 5506 |
Mean contig length (bp) | 877 | 617 | 551 |
Median contig length (bp) | 637 | 454 | 435 |
N50 (bp) | 1152 | 665 | 562 |
Mapped reads (%) | 82.94 | 79.53 | 80.23 |