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Table 4 Computing requirements for genomes and datasets of varying size

From: Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data

Test Organism Run time (hh:mm:ss) Peak memory usage (MB)
Read counting Yeast 00:01:18 ± 00:00:01 255 ± 0
Read counting Fly 00:36:34 ± 00:00:03 1138 ± 7
Read counting Human 00:19:56 ± 00:00:01 1053 ± 2
Manipulate annotations Yeast 00:00:27 ± 00:00:02 467 ± 0
Manipulate annotations Fly 00:03:37 ± 00:00:03 2620 ± 1
Manipulate annotations Human 00:18:42 ± 00:01:49 4419 ± 1
Export browser track Yeast 00:00:58 ± 00:00:00 281 ± 1
Export browser track Fly 00:09:05 ± 00:00:40 2452 ± 7
Export browser track Human 00:06:11 ± 00:00:03 537 ± 0
Build crossmap Yeast 00:00:35 ± 00:00:00 100 ± 0
Build crossmap Fly 00:10:44 ± 00:00:10 328 ± 7
Build crossmap Human 04:11:51 ± 00:06:32 130 ± 1
  1. Four command-line scripts were executed on yeast, fly, and human datasets. Runtimes and peak memory usage are given as the mean ± standard deviation of three replicates. See methods for details