Table 4 Computing requirements for genomes and datasets of varying size
From: Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data
Test | Organism | Run time (hh:mm:ss) | Peak memory usage (MB) |
|---|---|---|---|
Read counting | Yeast | 00:01:18 ± 00:00:01 | 255 ± 0 |
Read counting | Fly | 00:36:34 ± 00:00:03 | 1138 ± 7 |
Read counting | Human | 00:19:56 ± 00:00:01 | 1053 ± 2 |
Manipulate annotations | Yeast | 00:00:27 ± 00:00:02 | 467 ± 0 |
Manipulate annotations | Fly | 00:03:37 ± 00:00:03 | 2620 ± 1 |
Manipulate annotations | Human | 00:18:42 ± 00:01:49 | 4419 ± 1 |
Export browser track | Yeast | 00:00:58 ± 00:00:00 | 281 ± 1 |
Export browser track | Fly | 00:09:05 ± 00:00:40 | 2452 ± 7 |
Export browser track | Human | 00:06:11 ± 00:00:03 | 537 ± 0 |
Build crossmap | Yeast | 00:00:35 ± 00:00:00 | 100 ± 0 |
Build crossmap | Fly | 00:10:44 ± 00:00:10 | 328 ± 7 |
Build crossmap | Human | 04:11:51 ± 00:06:32 | 130 ± 1 |