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Table 2 Three proposed 7-locus MLST schemas for M. hominis: The three schemas contain variations of 9 genes that confer phylogenetic relationships similar to those found using whole genome SNPs. Schemas B and C show higher marginal diversity in Hunter-Gaston diversity indicex than schema A. Whereas, schema A shows lowest dN/dS ratio among the three

From: Genomic determination of minimum multi-locus sequence typing schemas to represent the genomic phylogeny of Mycoplasma hominis

Gene name SCHEMA A SCHEMA B SCHEMA C dN/dS (95% CI) Diversity Index (95% CI)
MHO_4840a
GENE-20
+ + + 0.09(0.08-0.1) 0.99(0.97-1.00)
MHO_0720a
GENE-58
+ + + 0.27(0.25-0.29) 0.97(0.92-1.00)
secD
GENE-94
+ + + 0.07(0.05-0.09) 0.97(0.92-1.00)
oppA
GENE-138
  + + 0.23(0.21-0.25) 0.96(0.91-1.00)
argS
GENE-183
  + + 0.07(0.05-0.09) 0.96(0.91-1.00)
hiss
GENE-236
+ +   0.09(0.06-0.12) 0.96(0.96-1.00)
MHO_1160a
GENE-265
+   + 0.02(0.01-0.03) 0.97(0.92-1.00)
tyrS
GENE-428
+   + 0.01(0.01-0.01) 0.97(0.92-1.00)
dnaG
GENE-519
+ +   0.11(0.09-0.14) 0.99(0.97-1.00)
Mean dN/dS (95% CI) 0.1(0.08-0.11) 0.13(0.11-0.15) 0.11(0.09-0.13)   
Mean Diversity (95% CI) 0.97(0.97-0.98) 0.97(0.96-0.98) 0.97(0.96-0.98)   
  1. a gene encoding a hypothetical protein. Gene name relates to annotation in ATCC 23114